Clone Name | bastl11f07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_482051.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2787 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 314 tttcttctcaagatgtcagaggatgaggatcctgatg 350 |||||||| |||||||||||||| ||| ||||||||| Sbjct: 151 tttcttctgaagatgtcagaggaagagaatcctgatg 187
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 314 tttcttctcaagatgtcagaggatgaggatcctgatg 350 |||||||| |||||||||||||| ||| ||||||||| Sbjct: 17444876 tttcttctgaagatgtcagaggaagagaatcctgatg 17444912 Score = 48.1 bits (24), Expect = 0.021 Identities = 36/40 (90%) Strand = Plus / Plus Query: 311 gcgtttcttctcaagatgtcagaggatgaggatcctgatg 350 ||||| |||||||| ||||||||||| ||| ||||||||| Sbjct: 17420303 gcgttccttctcaatatgtcagaggaggagaatcctgatg 17420342
>dbj|AP004465.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0690C12 Length = 139693 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 314 tttcttctcaagatgtcagaggatgaggatcctgatg 350 |||||||| |||||||||||||| ||| ||||||||| Sbjct: 55721 tttcttctgaagatgtcagaggaagagaatcctgatg 55757 Score = 48.1 bits (24), Expect = 0.021 Identities = 36/40 (90%) Strand = Plus / Plus Query: 311 gcgtttcttctcaagatgtcagaggatgaggatcctgatg 350 ||||| |||||||| ||||||||||| ||| ||||||||| Sbjct: 31148 gcgttccttctcaatatgtcagaggaggagaatcctgatg 31187
>ref|XM_482045.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2730 Score = 48.1 bits (24), Expect = 0.021 Identities = 36/40 (90%) Strand = Plus / Plus Query: 311 gcgtttcttctcaagatgtcagaggatgaggatcctgatg 350 ||||| |||||||| ||||||||||| ||| ||||||||| Sbjct: 148 gcgttccttctcaatatgtcagaggaggagaatcctgatg 187
>dbj|AP004647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1267_E11 Length = 117073 Score = 48.1 bits (24), Expect = 0.021 Identities = 36/40 (90%) Strand = Plus / Plus Query: 311 gcgtttcttctcaagatgtcagaggatgaggatcctgatg 350 ||||| |||||||| ||||||||||| ||| ||||||||| Sbjct: 103927 gcgttccttctcaatatgtcagaggaggagaatcctgatg 103966
>gb|AC133461.12| Mus musculus chromosome 15, clone RP23-52B2, complete sequence Length = 176450 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 cgacaggagccttgaaaccag 209 ||||||||||||||||||||| Sbjct: 119508 cgacaggagccttgaaaccag 119528
>emb|BX883049.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 8/11 Length = 349476 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 173 gctctggtgagtgcagcgacaggag 197 |||||||||||||||| |||||||| Sbjct: 284228 gctctggtgagtgcagggacaggag 284204
>gb|AC107772.19| Mus musculus chromosome 15, clone RP23-102L5, complete sequence Length = 194704 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 297 tcactgccatggaagcgtttcttctcaa 324 |||||| ||| ||||||||||||||||| Sbjct: 168468 tcactgacatagaagcgtttcttctcaa 168495
>gb|AC009738.3| Drosophila melanogaster clone BACR02J10, complete sequence Length = 158491 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ctggagaagctcggcgctct 231 |||||||||||||||||||| Sbjct: 21742 ctggagaagctcggcgctct 21723
>gb|AC147676.10| Canis Familiaris, clone XX-25H12, complete sequence Length = 203436 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 gtcagaggatgaggatcctg 347 |||||||||||||||||||| Sbjct: 184659 gtcagaggatgaggatcctg 184640
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 accaccttcacaaatcacaa 125 |||||||||||||||||||| Sbjct: 7599433 accaccttcacaaatcacaa 7599414
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0096L14, from chromosome 3, complete sequence Length = 131142 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 accaccttcacaaatcacaa 125 |||||||||||||||||||| Sbjct: 115857 accaccttcacaaatcacaa 115876
>gb|AY113487.1| Drosophila melanogaster RE46170 full insert cDNA Length = 559 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 ctggagaagctcggcgctct 231 |||||||||||||||||||| Sbjct: 313 ctggagaagctcggcgctct 332
>ref|NM_137598.2| Drosophila melanogaster Odorant-binding protein 56a CG11797-RA (Obp56a), mRNA Length = 550 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 ctggagaagctcggcgctct 231 |||||||||||||||||||| Sbjct: 315 ctggagaagctcggcgctct 334
>gb|AY071723.1| Drosophila melanogaster RH38644 full length cDNA Length = 562 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 ctggagaagctcggcgctct 231 |||||||||||||||||||| Sbjct: 314 ctggagaagctcggcgctct 333
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 accaccttcacaaatcacaa 125 |||||||||||||||||||| Sbjct: 7597268 accaccttcacaaatcacaa 7597249
>gb|AE003795.3| Drosophila melanogaster chromosome 2R, section 55 of 73 of the complete sequence Length = 248096 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 ctggagaagctcggcgctct 231 |||||||||||||||||||| Sbjct: 242486 ctggagaagctcggcgctct 242505
>gb|AC004307.1|AC004307 Drosophila melanogaster DNA sequence (P1 DS02074 (D199)), complete sequence Length = 30848 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ctggagaagctcggcgctct 231 |||||||||||||||||||| Sbjct: 4153 ctggagaagctcggcgctct 4134 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,665,785 Number of Sequences: 3902068 Number of extensions: 2665785 Number of successful extensions: 52734 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52640 Number of HSP's gapped (non-prelim): 94 length of query: 378 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 356 effective length of database: 17,147,199,772 effective search space: 6104403118832 effective search space used: 6104403118832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)