ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_482051.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.005
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
3dbj|AP004465.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
4ref|XM_482045.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.021
5dbj|AP004647.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
6gb|AC133461.12| Mus musculus chromosome 15, clone RP23-52B2, com... 42 1.3
7emb|BX883049.1| Rattus norvegicus chromosome 20, major histocomp... 42 1.3
8gb|AC107772.19| Mus musculus chromosome 15, clone RP23-102L5, co... 40 5.0
9gb|AC009738.3| Drosophila melanogaster clone BACR02J10, complete... 40 5.0
10gb|AC147676.10| Canis Familiaris, clone XX-25H12, complete sequence 40 5.0
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.0
12gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.0
13gb|AY113487.1| Drosophila melanogaster RE46170 full insert cDNA 40 5.0
14ref|NM_137598.2| Drosophila melanogaster Odorant-binding protein... 40 5.0
15gb|AY071723.1| Drosophila melanogaster RH38644 full length cDNA 40 5.0
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
17gb|AE003795.3| Drosophila melanogaster chromosome 2R, section 55... 40 5.0
18gb|AC004307.1|AC004307 Drosophila melanogaster DNA sequence (P1 ... 40 5.0

>ref|XM_482051.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2787

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 314 tttcttctcaagatgtcagaggatgaggatcctgatg 350
           |||||||| |||||||||||||| ||| |||||||||
Sbjct: 151 tttcttctgaagatgtcagaggaagagaatcctgatg 187



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 314      tttcttctcaagatgtcagaggatgaggatcctgatg 350
                |||||||| |||||||||||||| ||| |||||||||
Sbjct: 17444876 tttcttctgaagatgtcagaggaagagaatcctgatg 17444912



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 311      gcgtttcttctcaagatgtcagaggatgaggatcctgatg 350
                ||||| |||||||| ||||||||||| ||| |||||||||
Sbjct: 17420303 gcgttccttctcaatatgtcagaggaggagaatcctgatg 17420342



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>dbj|AP004465.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0690C12
          Length = 139693

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 314   tttcttctcaagatgtcagaggatgaggatcctgatg 350
             |||||||| |||||||||||||| ||| |||||||||
Sbjct: 55721 tttcttctgaagatgtcagaggaagagaatcctgatg 55757



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 311   gcgtttcttctcaagatgtcagaggatgaggatcctgatg 350
             ||||| |||||||| ||||||||||| ||| |||||||||
Sbjct: 31148 gcgttccttctcaatatgtcagaggaggagaatcctgatg 31187



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>ref|XM_482045.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2730

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 311 gcgtttcttctcaagatgtcagaggatgaggatcctgatg 350
           ||||| |||||||| ||||||||||| ||| |||||||||
Sbjct: 148 gcgttccttctcaatatgtcagaggaggagaatcctgatg 187



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>dbj|AP004647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1267_E11
          Length = 117073

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 311    gcgtttcttctcaagatgtcagaggatgaggatcctgatg 350
              ||||| |||||||| ||||||||||| ||| |||||||||
Sbjct: 103927 gcgttccttctcaatatgtcagaggaggagaatcctgatg 103966



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>gb|AC133461.12| Mus musculus chromosome 15, clone RP23-52B2, complete sequence
          Length = 176450

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 189    cgacaggagccttgaaaccag 209
              |||||||||||||||||||||
Sbjct: 119508 cgacaggagccttgaaaccag 119528



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>emb|BX883049.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 8/11
          Length = 349476

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 173    gctctggtgagtgcagcgacaggag 197
              |||||||||||||||| ||||||||
Sbjct: 284228 gctctggtgagtgcagggacaggag 284204



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>gb|AC107772.19| Mus musculus chromosome 15, clone RP23-102L5, complete sequence
          Length = 194704

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 297    tcactgccatggaagcgtttcttctcaa 324
              |||||| ||| |||||||||||||||||
Sbjct: 168468 tcactgacatagaagcgtttcttctcaa 168495



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>gb|AC009738.3| Drosophila melanogaster clone BACR02J10, complete sequence
          Length = 158491

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   ctggagaagctcggcgctct 231
             ||||||||||||||||||||
Sbjct: 21742 ctggagaagctcggcgctct 21723



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>gb|AC147676.10| Canis Familiaris, clone XX-25H12, complete sequence
          Length = 203436

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    gtcagaggatgaggatcctg 347
              ||||||||||||||||||||
Sbjct: 184659 gtcagaggatgaggatcctg 184640



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 106     accaccttcacaaatcacaa 125
               ||||||||||||||||||||
Sbjct: 7599433 accaccttcacaaatcacaa 7599414



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>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0096L14, from chromosome 3, complete sequence
          Length = 131142

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    accaccttcacaaatcacaa 125
              ||||||||||||||||||||
Sbjct: 115857 accaccttcacaaatcacaa 115876



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>gb|AY113487.1| Drosophila melanogaster RE46170 full insert cDNA
          Length = 559

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 212 ctggagaagctcggcgctct 231
           ||||||||||||||||||||
Sbjct: 313 ctggagaagctcggcgctct 332



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>ref|NM_137598.2| Drosophila melanogaster Odorant-binding protein 56a CG11797-RA
           (Obp56a), mRNA
          Length = 550

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 212 ctggagaagctcggcgctct 231
           ||||||||||||||||||||
Sbjct: 315 ctggagaagctcggcgctct 334



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>gb|AY071723.1| Drosophila melanogaster RH38644 full length cDNA
          Length = 562

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 212 ctggagaagctcggcgctct 231
           ||||||||||||||||||||
Sbjct: 314 ctggagaagctcggcgctct 333



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 106     accaccttcacaaatcacaa 125
               ||||||||||||||||||||
Sbjct: 7597268 accaccttcacaaatcacaa 7597249



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>gb|AE003795.3| Drosophila melanogaster chromosome 2R, section 55 of 73 of the complete
              sequence
          Length = 248096

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    ctggagaagctcggcgctct 231
              ||||||||||||||||||||
Sbjct: 242486 ctggagaagctcggcgctct 242505



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>gb|AC004307.1|AC004307 Drosophila melanogaster DNA sequence (P1 DS02074 (D199)), complete
            sequence
          Length = 30848

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  ctggagaagctcggcgctct 231
            ||||||||||||||||||||
Sbjct: 4153 ctggagaagctcggcgctct 4134


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,665,785
Number of Sequences: 3902068
Number of extensions: 2665785
Number of successful extensions: 52734
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52640
Number of HSP's gapped (non-prelim): 94
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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