Clone Name | bastl11f04 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_192531.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2370 Score = 327 bits (165), Expect = 2e-86 Identities = 227/245 (92%), Gaps = 2/245 (0%) Strand = Plus / Plus Query: 242 gtggatacaatcctagacaaggaaaattttacacttgaagaacttcttgacgaggatgaa 301 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 172 gtggatacaatcctagacaaggaaaattttacactggaagaacttcttgacgaggatgaa 231 Query: 302 attattcaagagtgcaaagcactgaacacccgactcataaatttcctgcgtgacaaggcc 361 |||||||||||||||||||| ||||| || ||||||||||||||| ||||||||| ||| Sbjct: 232 attattcaagagtgcaaagctctgaatacacgactcataaatttcttgcgtgacagagcc 291 Query: 362 caggtcgaacaattgcttcgttatgttgttgaagaagttccggatgatgctg-aaaaaag 420 ||||| || |||||||||||||||||||| |||||||| || |||||||||| ||||||| Sbjct: 292 caggtggagcaattgcttcgttatgttgtggaagaagtaccagatgatgctgaaaaaaag 351 Query: 421 cgctctttc-agttccctttcattgcttgtgagatatttacttgtgaaatcgatgtcatt 479 ||||||||| |||| || ||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 352 cgctctttcaagtttccattcattgcttgtgagatatttacatgtgaaattgatgtcatt 411 Query: 480 ttgag 484 ||||| Sbjct: 412 ttgag 416 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 203 atgttttggcgcatgaccggtctctccgcggcctcgcccgt 243 ||||| |||||||||||||| || ||||||||||||||||| Sbjct: 1 atgttctggcgcatgaccggcctgtccgcggcctcgcccgt 41
>dbj|AK099566.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034M16, full insert sequence Length = 3155 Score = 242 bits (122), Expect = 9e-61 Identities = 244/282 (86%), Gaps = 2/282 (0%) Strand = Plus / Plus Query: 190 cgccgccgccaccatgttttggcgcatgaccggtctctccgcggcctcgcccgtggatac 249 ||||| |||| ||||||| ||||||||||| |||||||||||||||||||| |||||||| Sbjct: 211 cgccgtcgccgccatgttctggcgcatgactggtctctccgcggcctcgccggtggatac 270 Query: 250 aatcctagacaaggaaaattttacacttgaagaacttcttgacgaggatgaaattattca 309 ||| ||||||||||| || || ||| | |||||||||||||||||||||||||| ||||| Sbjct: 271 aattctagacaaggagaacttcacattagaagaacttcttgacgaggatgaaataattca 330 Query: 310 agagtgcaaagcactgaacacccgactcataaatttcctgcgtgacaaggcccaggtcga 369 ||||||||||| ||||| || || |||||||||||| |||| |||||||| || || || Sbjct: 331 ggagtgcaaagcgctgaatactcgtctcataaatttcttgcgagacaaggctcaagtgga 390 Query: 370 acaattgcttcgttatgttgttgaagaagttccggatgatgctgaaaa-aagcgctc-tt 427 |||||||||||||| | || |||||||| || || ||| ||||||| || || || || Sbjct: 391 gcaattgcttcgttacatcgtggaagaagtaccagaagattctgaaaagaaacgttcttt 450 Query: 428 tcagttccctttcattgcttgtgagatatttacttgtgaaat 469 | ||||||| ||||||||||||||||||||||| |||||||| Sbjct: 451 taagttcccattcattgcttgtgagatatttacctgtgaaat 492
>dbj|AK071878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039C12, full insert sequence Length = 2733 Score = 242 bits (122), Expect = 9e-61 Identities = 244/282 (86%), Gaps = 2/282 (0%) Strand = Plus / Plus Query: 190 cgccgccgccaccatgttttggcgcatgaccggtctctccgcggcctcgcccgtggatac 249 ||||| |||| ||||||| ||||||||||| |||||||||||||||||||| |||||||| Sbjct: 198 cgccgtcgccgccatgttctggcgcatgactggtctctccgcggcctcgccggtggatac 257 Query: 250 aatcctagacaaggaaaattttacacttgaagaacttcttgacgaggatgaaattattca 309 ||| ||||||||||| || || ||| | |||||||||||||||||||||||||| ||||| Sbjct: 258 aattctagacaaggagaacttcacattagaagaacttcttgacgaggatgaaataattca 317 Query: 310 agagtgcaaagcactgaacacccgactcataaatttcctgcgtgacaaggcccaggtcga 369 ||||||||||| ||||| || || |||||||||||| |||| |||||||| || || || Sbjct: 318 ggagtgcaaagcgctgaatactcgtctcataaatttcttgcgagacaaggctcaagtgga 377 Query: 370 acaattgcttcgttatgttgttgaagaagttccggatgatgctgaaaa-aagcgctc-tt 427 |||||||||||||| | || |||||||| || || ||| ||||||| || || || || Sbjct: 378 gcaattgcttcgttacatcgtggaagaagtaccagaagattctgaaaagaaacgttcttt 437 Query: 428 tcagttccctttcattgcttgtgagatatttacttgtgaaat 469 | ||||||| ||||||||||||||||||||||| |||||||| Sbjct: 438 taagttcccattcattgcttgtgagatatttacctgtgaaat 479
>ref|XM_476020.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2313 Score = 232 bits (117), Expect = 9e-58 Identities = 233/269 (86%), Gaps = 2/269 (0%) Strand = Plus / Plus Query: 203 atgttttggcgcatgaccggtctctccgcggcctcgcccgtggatacaatcctagacaag 262 ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 1 atgttctggcgcatgactggtctctccgcggcctcgccggtggatacaattctagacaag 60 Query: 263 gaaaattttacacttgaagaacttcttgacgaggatgaaattattcaagagtgcaaagca 322 || || || ||| | |||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 61 gagaacttcacattagaagaacttcttgacgaggatgaaataattcaggagtgcaaagcg 120 Query: 323 ctgaacacccgactcataaatttcctgcgtgacaaggcccaggtcgaacaattgcttcgt 382 ||||| || || |||||||||||| |||| |||||||| || || || |||||||||||| Sbjct: 121 ctgaatactcgtctcataaatttcttgcgagacaaggctcaagtggagcaattgcttcgt 180 Query: 383 tatgttgttgaagaagttccggatgatgctgaaaa-aagcgctc-tttcagttccctttc 440 || | || |||||||| || || ||| ||||||| || || || ||| ||||||| ||| Sbjct: 181 tacatcgtggaagaagtaccagaagattctgaaaagaaacgttcttttaagttcccattc 240 Query: 441 attgcttgtgagatatttacttgtgaaat 469 |||||||||||||||||||| |||||||| Sbjct: 241 attgcttgtgagatatttacctgtgaaat 269
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 174 bits (88), Expect = 2e-40 Identities = 100/104 (96%) Strand = Plus / Plus Query: 242 gtggatacaatcctagacaaggaaaattttacacttgaagaacttcttgacgaggatgaa 301 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 22772327 gtggatacaatcctagacaaggaaaattttacactggaagaacttcttgacgaggatgaa 22772386 Query: 302 attattcaagagtgcaaagcactgaacacccgactcataaattt 345 |||||||||||||||||||| ||||| || |||||||||||||| Sbjct: 22772387 attattcaagagtgcaaagctctgaatacacgactcataaattt 22772430 Score = 95.6 bits (48), Expect = 1e-16 Identities = 76/84 (90%), Gaps = 1/84 (1%) Strand = Plus / Plus Query: 348 tgcgtgacaaggcccaggtcgaacaattgcttcgttatgttgttgaagaagttccggatg 407 ||||||||| |||||||| || |||||||||||||||||||| |||||||| || |||| Sbjct: 22773045 tgcgtgacagagcccaggtggagcaattgcttcgttatgttgtggaagaagtaccagatg 22773104 Query: 408 atgctg-aaaaaagcgctctttca 430 |||||| ||||||||||||||||| Sbjct: 22773105 atgctgaaaaaaagcgctctttca 22773128 Score = 79.8 bits (40), Expect = 8e-12 Identities = 69/78 (88%), Gaps = 3/78 (3%) Strand = Plus / Plus Query: 170 gccggaaaccctagatccaccgccgcc---gccaccatgttttggcgcatgaccggtctc 226 |||||||||||||||||| || ||||| ||| ||||||| |||||||||||||| || Sbjct: 22771392 gccggaaaccctagatccgcctccgcctccgccgccatgttctggcgcatgaccggcctg 22771451 Query: 227 tccgcggcctcgcccgtg 244 |||||||||||||||||| Sbjct: 22771452 tccgcggcctcgcccgtg 22771469 Score = 77.8 bits (39), Expect = 3e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 438 ttcattgcttgtgagatatttacttgtgaaatcgatgtcattttgag 484 ||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 22773219 ttcattgcttgtgagatatttacatgtgaaattgatgtcattttgag 22773265 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 51 cgcgatcccaattcgatccgctc 73 ||||||||||||||||||||||| Sbjct: 22771240 cgcgatcccaattcgatccgctc 22771262 Score = 42.1 bits (21), Expect = 1.7 Identities = 35/39 (89%), Gaps = 3/39 (7%) Strand = Plus / Plus Query: 7 aaaagcgtgctgtttttt---cctcctctcgtgcgcctc 42 |||||||||||||| ||| |||||||||||||||||| Sbjct: 22771177 aaaagcgtgctgttcttttctcctcctctcgtgcgcctc 22771215
>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0712E02 Length = 158084 Score = 174 bits (88), Expect = 2e-40 Identities = 100/104 (96%) Strand = Plus / Plus Query: 242 gtggatacaatcctagacaaggaaaattttacacttgaagaacttcttgacgaggatgaa 301 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 89716 gtggatacaatcctagacaaggaaaattttacactggaagaacttcttgacgaggatgaa 89775 Query: 302 attattcaagagtgcaaagcactgaacacccgactcataaattt 345 |||||||||||||||||||| ||||| || |||||||||||||| Sbjct: 89776 attattcaagagtgcaaagctctgaatacacgactcataaattt 89819 Score = 95.6 bits (48), Expect = 1e-16 Identities = 76/84 (90%), Gaps = 1/84 (1%) Strand = Plus / Plus Query: 348 tgcgtgacaaggcccaggtcgaacaattgcttcgttatgttgttgaagaagttccggatg 407 ||||||||| |||||||| || |||||||||||||||||||| |||||||| || |||| Sbjct: 90434 tgcgtgacagagcccaggtggagcaattgcttcgttatgttgtggaagaagtaccagatg 90493 Query: 408 atgctg-aaaaaagcgctctttca 430 |||||| ||||||||||||||||| Sbjct: 90494 atgctgaaaaaaagcgctctttca 90517 Score = 79.8 bits (40), Expect = 8e-12 Identities = 69/78 (88%), Gaps = 3/78 (3%) Strand = Plus / Plus Query: 170 gccggaaaccctagatccaccgccgcc---gccaccatgttttggcgcatgaccggtctc 226 |||||||||||||||||| || ||||| ||| ||||||| |||||||||||||| || Sbjct: 88781 gccggaaaccctagatccgcctccgcctccgccgccatgttctggcgcatgaccggcctg 88840 Query: 227 tccgcggcctcgcccgtg 244 |||||||||||||||||| Sbjct: 88841 tccgcggcctcgcccgtg 88858 Score = 77.8 bits (39), Expect = 3e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 438 ttcattgcttgtgagatatttacttgtgaaatcgatgtcattttgag 484 ||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 90608 ttcattgcttgtgagatatttacatgtgaaattgatgtcattttgag 90654 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 51 cgcgatcccaattcgatccgctc 73 ||||||||||||||||||||||| Sbjct: 88629 cgcgatcccaattcgatccgctc 88651 Score = 42.1 bits (21), Expect = 1.7 Identities = 35/39 (89%), Gaps = 3/39 (7%) Strand = Plus / Plus Query: 7 aaaagcgtgctgtttttt---cctcctctcgtgcgcctc 42 |||||||||||||| ||| |||||||||||||||||| Sbjct: 88566 aaaagcgtgctgttcttttctcctcctctcgtgcgcctc 88604
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 111 bits (56), Expect = 2e-21 Identities = 92/104 (88%) Strand = Plus / Plus Query: 242 gtggatacaatcctagacaaggaaaattttacacttgaagaacttcttgacgaggatgaa 301 ||||||||||| ||||||||||| || || ||| | |||||||||||||||||||||||| Sbjct: 79883 gtggatacaattctagacaaggagaacttcacattagaagaacttcttgacgaggatgaa 79942 Query: 302 attattcaagagtgcaaagcactgaacacccgactcataaattt 345 || ||||| ||||||||||| ||||| || || ||||||||||| Sbjct: 79943 ataattcaggagtgcaaagcgctgaatactcgtctcataaattt 79986 Score = 69.9 bits (35), Expect = 7e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 190 cgccgccgccaccatgttttggcgcatgaccggtctctccgcggcctcgcc 240 ||||| |||| ||||||| ||||||||||| |||||||||||||||||||| Sbjct: 78773 cgccgtcgccgccatgttctggcgcatgactggtctctccgcggcctcgcc 78823 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 431 gttccctttcattgcttgtgagatatttacttgtgaaat 469 |||||| ||||||||||||||||||||||| |||||||| Sbjct: 80528 gttcccattcattgcttgtgagatatttacctgtgaaat 80566
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 111 bits (56), Expect = 2e-21 Identities = 92/104 (88%) Strand = Plus / Plus Query: 242 gtggatacaatcctagacaaggaaaattttacacttgaagaacttcttgacgaggatgaa 301 ||||||||||| ||||||||||| || || ||| | |||||||||||||||||||||||| Sbjct: 29301226 gtggatacaattctagacaaggagaacttcacattagaagaacttcttgacgaggatgaa 29301285 Query: 302 attattcaagagtgcaaagcactgaacacccgactcataaattt 345 || ||||| ||||||||||| ||||| || || ||||||||||| Sbjct: 29301286 ataattcaggagtgcaaagcgctgaatactcgtctcataaattt 29301329 Score = 69.9 bits (35), Expect = 7e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 190 cgccgccgccaccatgttttggcgcatgaccggtctctccgcggcctcgcc 240 ||||| |||| ||||||| ||||||||||| |||||||||||||||||||| Sbjct: 29300116 cgccgtcgccgccatgttctggcgcatgactggtctctccgcggcctcgcc 29300166 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 431 gttccctttcattgcttgtgagatatttacttgtgaaat 469 |||||| ||||||||||||||||||||||| |||||||| Sbjct: 29301871 gttcccattcattgcttgtgagatatttacctgtgaaat 29301909 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 tagatccaccgccgccgcca 200 |||||||||||||||||||| Sbjct: 16893016 tagatccaccgccgccgcca 16892997 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ccaccgccgccgccaccatg 205 |||||||||||||||||||| Sbjct: 5284616 ccaccgccgccgccaccatg 5284635
>ref|NM_102783.4| Arabidopsis thaliana unknown protein AT1G30470 mRNA, complete cds Length = 2939 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 284 cttcttgacgaggatgaaattattcaagagtgcaaagcactgaa 327 ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 334 cttcttgacgaggatgaaattattcaagaatgcaaagccctgaa 377
>ref|XM_473921.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2331 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/116 (82%) Strand = Plus / Plus Query: 242 gtggatacaatcctagacaaggaaaattttacacttgaagaacttcttgacgaggatgaa 301 |||||||| || |||||||||||||||| | | || || |||||||| ||||||||| Sbjct: 40 gtggatactattttagacaaggaaaatttcaagttggaggaccttcttgatgaggatgaa 99 Query: 302 attattcaagagtgcaaagcactgaacacccgactcataaatttcctgcgtgacaa 357 || || || |||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 100 ataatccaggagtgcaaagcactaaacacccgcctaatcaattttctgcgggacaa 155
>gb|AC009917.2|F26G16 Arabidopsis thaliana chromosome 1 BAC F26G16 sequence, complete sequence Length = 75799 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 284 cttcttgacgaggatgaaattattcaagagtgcaaagcactgaa 327 ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 31059 cttcttgacgaggatgaaattattcaagaatgcaaagccctgaa 31102
>dbj|AK066330.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013061K16, full insert sequence Length = 2332 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/116 (82%) Strand = Plus / Plus Query: 242 gtggatacaatcctagacaaggaaaattttacacttgaagaacttcttgacgaggatgaa 301 |||||||| || |||||||||||||||| | | || || |||||||| ||||||||| Sbjct: 388 gtggatactattttagacaaggaaaatttcaagttggaggaccttcttgatgaggatgaa 447 Query: 302 attattcaagagtgcaaagcactgaacacccgactcataaatttcctgcgtgacaa 357 || || || |||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 448 ataatccaggagtgcaaagcactaaacacccgcctaatcaattttctgcgggacaa 503
>ref|NM_128396.1| Arabidopsis thaliana unknown protein AT2G28360 mRNA, complete cds Length = 2481 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 278 gaagaacttcttgacgaggatgaaattattcaagagtgcaaagcactgaacacccgactc 337 ||||| |||||||||||||| || ||||||||||| |||||||| |||| | ||||||| Sbjct: 229 gaagagcttcttgacgaggaagagattattcaagaatgcaaagctttgaatagccgactc 288 Query: 338 ataaattt 345 || ||||| Sbjct: 289 attaattt 296
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence Length = 164805 Score = 63.9 bits (32), Expect = 5e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 242 gtggatacaatcctagacaaggaaaattttacacttgaagaacttcttgacgaggatgaa 301 |||||||| || |||||||||||||||| | | || || |||||||| ||||||||| Sbjct: 145165 gtggatactattttagacaaggaaaatttcaagttggaggaccttcttgatgaggatgaa 145224 Query: 302 attattcaagagtgcaaagcactgaacacccg 333 || || || |||||||||||||| |||||||| Sbjct: 145225 ataatccaggagtgcaaagcactaaacacccg 145256
>gb|AY136417.1| Arabidopsis thaliana unknown protein (At2g28360) mRNA, complete cds Length = 3033 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 278 gaagaacttcttgacgaggatgaaattattcaagagtgcaaagcactgaacacccgactc 337 ||||| |||||||||||||| || ||||||||||| |||||||| |||| | ||||||| Sbjct: 266 gaagagcttcttgacgaggaagagattattcaagaatgcaaagctttgaatagccgactc 325 Query: 338 ataaattt 345 || ||||| Sbjct: 326 attaattt 333
>gb|AC006283.6| Arabidopsis thaliana chromosome 2 clone T1B3 map mi54, complete sequence Length = 93122 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 278 gaagaacttcttgacgaggatgaaattattcaagagtgcaaagcactgaacacccgactc 337 ||||| |||||||||||||| || ||||||||||| |||||||| |||| | ||||||| Sbjct: 40953 gaagagcttcttgacgaggaagagattattcaagaatgcaaagctttgaatagccgactc 41012 Query: 338 ataaattt 345 || ||||| Sbjct: 41013 attaattt 41020
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 63.9 bits (32), Expect = 5e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 242 gtggatacaatcctagacaaggaaaattttacacttgaagaacttcttgacgaggatgaa 301 |||||||| || |||||||||||||||| | | || || |||||||| ||||||||| Sbjct: 31567482 gtggatactattttagacaaggaaaatttcaagttggaggaccttcttgatgaggatgaa 31567541 Query: 302 attattcaagagtgcaaagcactgaacacccg 333 || || || |||||||||||||| |||||||| Sbjct: 31567542 ataatccaggagtgcaaagcactaaacacccg 31567573
>dbj|AP004505.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT10E18, TM0035, complete sequence Length = 106041 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 441 attgcttgtgagatatttacttgtgaaatcgatgtcattttga 483 |||||||||||||| || || |||||||| ||||||||||||| Sbjct: 34496 attgcttgtgagattttcacatgtgaaattgatgtcattttga 34538
>ref|NM_100673.2| Arabidopsis thaliana unknown protein AT1G07990 mRNA, complete cds Length = 2904 Score = 48.1 bits (24), Expect = 0.027 Identities = 54/64 (84%) Strand = Plus / Plus Query: 255 tagacaaggaaaattttacacttgaagaacttcttgacgaggatgaaattattcaagagt 314 ||||||| |||||||| || | ||||| |||||||| ||||| || ||||||||||| | Sbjct: 308 tagacaaagaaaatttcacgttggaagagcttcttgatgaggaagagattattcaagaat 367 Query: 315 gcaa 318 |||| Sbjct: 368 gcaa 371
>gb|AY127028.1| Arabidopsis thaliana At1g07990/T6D22_5 mRNA, complete cds Length = 2905 Score = 48.1 bits (24), Expect = 0.027 Identities = 54/64 (84%) Strand = Plus / Plus Query: 255 tagacaaggaaaattttacacttgaagaacttcttgacgaggatgaaattattcaagagt 314 ||||||| |||||||| || | ||||| |||||||| ||||| || ||||||||||| | Sbjct: 308 tagacaaagaaaatttcacgttggaagagcttcttgatgaggaagagattattcaagaat 367 Query: 315 gcaa 318 |||| Sbjct: 368 gcaa 371
>gb|BT004535.1| Arabidopsis thaliana At1g07990/T6D22_5 gene, complete cds Length = 2409 Score = 48.1 bits (24), Expect = 0.027 Identities = 54/64 (84%) Strand = Plus / Plus Query: 255 tagacaaggaaaattttacacttgaagaacttcttgacgaggatgaaattattcaagagt 314 ||||||| |||||||| || | ||||| |||||||| ||||| || ||||||||||| | Sbjct: 53 tagacaaagaaaatttcacgttggaagagcttcttgatgaggaagagattattcaagaat 112 Query: 315 gcaa 318 |||| Sbjct: 113 gcaa 116
>gb|AC026875.4|AC026875 Genomic sequence for Arabidopsis thaliana BAC T6D22 from chromosome I, complete sequence Length = 120965 Score = 48.1 bits (24), Expect = 0.027 Identities = 54/64 (84%) Strand = Plus / Plus Query: 255 tagacaaggaaaattttacacttgaagaacttcttgacgaggatgaaattattcaagagt 314 ||||||| |||||||| || | ||||| |||||||| ||||| || ||||||||||| | Sbjct: 33584 tagacaaagaaaatttcacgttggaagagcttcttgatgaggaagagattattcaagaat 33643 Query: 315 gcaa 318 |||| Sbjct: 33644 gcaa 33647
>gb|U63815.1|ATU63815 Arabidopsis thaliana AT.I.24-1, AT.I.24-2, AT.I.24-3, AT.I.24-4, AT.I.24-5, AT.I.24-6, AT.I.24-9 and AT.I.24-14 genes, partial cds, AT.I.24-7, ascorbate peroxidase (ATHAPX1), EF-1alpha-A1, -A2 and -A3 (EF-1alpha) and AT.I.24-13 genes, complete cds Length = 63093 Score = 48.1 bits (24), Expect = 0.027 Identities = 54/64 (84%) Strand = Plus / Plus Query: 255 tagacaaggaaaattttacacttgaagaacttcttgacgaggatgaaattattcaagagt 314 ||||||| |||||||| || | ||||| |||||||| ||||| || ||||||||||| | Sbjct: 62156 tagacaaagaaaatttcacgttggaagagcttcttgatgaggaagagattattcaagaat 62215 Query: 315 gcaa 318 |||| Sbjct: 62216 gcaa 62219
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 180 ctagatccaccgccgccgccac 201 |||||||||||||||||||||| Sbjct: 19118826 ctagatccaccgccgccgccac 19118805 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 agatccaccgccgccgccacc 202 ||||||||||||||||||||| Sbjct: 8049192 agatccaccgccgccgccacc 8049172
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 180 ctagatccaccgccgccgccac 201 |||||||||||||||||||||| Sbjct: 19045053 ctagatccaccgccgccgccac 19045032 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 agatccaccgccgccgccacc 202 ||||||||||||||||||||| Sbjct: 8049073 agatccaccgccgccgccacc 8049053
>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127026 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 180 ctagatccaccgccgccgccac 201 |||||||||||||||||||||| Sbjct: 107153 ctagatccaccgccgccgccac 107174
>gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete genome Length = 686194 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 453 atatttacttgtgaaatcgat 473 ||||||||||||||||||||| Sbjct: 624233 atatttacttgtgaaatcgat 624253
>ref|XM_811829.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509693.130) partial mRNA Length = 774 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 agatccaccgccgccgccacc 202 ||||||||||||||||||||| Sbjct: 744 agatccaccgccgccgccacc 764
>emb|CR722411.2|CNS0GKCX Tetraodon nigroviridis full-length cDNA Length = 410 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ccaccgccgccgccaccatgt 206 ||||||||||||||||||||| Sbjct: 17 ccaccgccgccgccaccatgt 37
>emb|BX629355.3|CNS09SBR Tetraodon nigroviridis Length = 128373 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 ccaccgccgccgccaccatgt 206 ||||||||||||||||||||| Sbjct: 72803 ccaccgccgccgccaccatgt 72783
>emb|AL732531.3|CNS08C96 Oryza sativa chromosome 12, . BAC OJ1005_G05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151117 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 agatccaccgccgccgccacc 202 ||||||||||||||||||||| Sbjct: 94486 agatccaccgccgccgccacc 94506
>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06, complete sequence Length = 143130 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 tagatccaccgccgccgcca 200 |||||||||||||||||||| Sbjct: 105502 tagatccaccgccgccgcca 105483
>gb|BC074599.1| Xenopus tropicalis MGC69468 protein, mRNA (cDNA clone MGC:69468 IMAGE:5336075), complete cds Length = 1425 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ccaccgccgccgccaccatg 205 |||||||||||||||||||| Sbjct: 792 ccaccgccgccgccaccatg 773
>gb|AC129943.8| Mus musculus chromosome 5, clone RP23-410M21, complete sequence Length = 178544 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 aaattttacacttgaagaac 284 |||||||||||||||||||| Sbjct: 60716 aaattttacacttgaagaac 60697
>gb|AC129552.20| Mus musculus chromosome 5, clone RP24-122N24, complete sequence Length = 153520 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ccaccgccgccgccaccatg 205 |||||||||||||||||||| Sbjct: 10925 ccaccgccgccgccaccatg 10906
>gb|AC136999.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009L15, complete sequence Length = 137570 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 tagatccaccgccgccgcca 200 |||||||||||||||||||| Sbjct: 24059 tagatccaccgccgccgcca 24040
>gb|AC006672.2| Caenorhabditis elegans cosmid K08D12, complete sequence Length = 33673 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gatccaccgccgccgccacc 202 |||||||||||||||||||| Sbjct: 15746 gatccaccgccgccgccacc 15727
>emb|BX682239.3| Human DNA sequence from clone WI2-80732C2 on chromosome X, complete sequence Length = 12711 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 ttccctttcattgcttgtga 451 |||||||||||||||||||| Sbjct: 1190 ttccctttcattgcttgtga 1209
>emb|AL137857.29| Human DNA sequence from clone RP5-1166H10 on chromosome 1p33-35.1 Contains the MATN1 gene for matrilin 1 cartilage matrix protein, a novel gene (FLJ46197, FLJ33163), the 3' end of the gene for Lysosomal-associated multispanning membrane protein-5 (LAPTM5) and a CpG island, complete sequence Length = 152042 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 cccctctcccgatccacccc 94 |||||||||||||||||||| Sbjct: 29584 cccctctcccgatccacccc 29565
>ref|XM_965216.1| PREDICTED: Tribolium castaneum similar to CG14622-PC, isoform C (LOC658864), mRNA Length = 3767 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tccaccgccgccgccaccat 204 |||||||||||||||||||| Sbjct: 1791 tccaccgccgccgccaccat 1810
>emb|BX058202.1|CNS09H2M Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC38BH02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 328 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 ccgccgccgccaccatgttttggc 212 ||||||||||||||||||| |||| Sbjct: 271 ccgccgccgccaccatgttctggc 294
>emb|BX058201.1|CNS09H2L Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC38BH02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 957 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 ccgccgccgccaccatgttttggc 212 ||||||||||||||||||| |||| Sbjct: 745 ccgccgccgccaccatgttctggc 722
>gb|DQ116389.1| Oryza sativa (japonica cultivar-group) hexokinase 7 (HXK7) mRNA, complete cds Length = 1816 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ccaccgccgccgccaccatg 205 |||||||||||||||||||| Sbjct: 111 ccaccgccgccgccaccatg 92
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 atccggccgccgccgcccgg 131 |||||||||||||||||||| Sbjct: 2015886 atccggccgccgccgcccgg 2015867 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cggccgccgccgcccggatt 134 |||||||||||||||||||| Sbjct: 1120760 cggccgccgccgcccggatt 1120741
>ref|NM_171274.2| Caenorhabditis elegans K08D12.3b (K08D12.3) mRNA, complete cds Length = 376 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gatccaccgccgccgccacc 202 |||||||||||||||||||| Sbjct: 242 gatccaccgccgccgccacc 223
>ref|NM_171273.2| Caenorhabditis elegans K08D12.3a (K08D12.3) mRNA, complete cds Length = 672 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gatccaccgccgccgccacc 202 |||||||||||||||||||| Sbjct: 212 gatccaccgccgccgccacc 193
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 cggccgccgccgcccggattcgcg 138 |||||| ||||||||||||||||| Sbjct: 28975145 cggccggcgccgcccggattcgcg 28975168
>gb|AF262336.1|AF262336 Danio rerio beta-spectrin (sptb) mRNA, complete cds Length = 7371 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 aatttcctgcgtgacaaggcccag 364 ||||||||||||||| |||||||| Sbjct: 3058 aatttcctgcgtgacgaggcccag 3081
>gb|AC097373.3| Homo sapiens BAC clone RP11-64M20 from 4, complete sequence Length = 145580 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 tgtgaaatcgatgtcatttt 481 |||||||||||||||||||| Sbjct: 79144 tgtgaaatcgatgtcatttt 79163
>ref|NM_001004819.1| Xenopus tropicalis MGC69468 protein (MGC69468), mRNA Length = 1425 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ccaccgccgccgccaccatg 205 |||||||||||||||||||| Sbjct: 792 ccaccgccgccgccaccatg 773
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 atccggccgccgccgcccgg 131 |||||||||||||||||||| Sbjct: 2711404 atccggccgccgccgcccgg 2711423
>gb|AY884169.1| Oryza sativa (japonica cultivar-group) hexokinase 6 (HXK6) mRNA, complete cds Length = 1652 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ccaccgccgccgccaccatg 205 |||||||||||||||||||| Sbjct: 101 ccaccgccgccgccaccatg 82
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ccaatccggccgccgccgcc 128 |||||||||||||||||||| Sbjct: 2495246 ccaatccggccgccgccgcc 2495265
>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0724B10 Length = 169143 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 cggccgccgccgcccggattcgcg 138 |||||| ||||||||||||||||| Sbjct: 21310 cggccggcgccgcccggattcgcg 21333
>dbj|AP004052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1218_D07 Length = 114511 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 cggccgccgccgcccggattcgcg 138 |||||| ||||||||||||||||| Sbjct: 58203 cggccggcgccgcccggattcgcg 58226
>dbj|AK067988.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123D05, full insert sequence Length = 1777 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ccaccgccgccgccaccatg 205 |||||||||||||||||||| Sbjct: 147 ccaccgccgccgccaccatg 128
>emb|CR761302.2| Xenopus tropicalis finished cDNA, clone TEgg050d11 Length = 1306 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ccaccgccgccgccaccatg 205 |||||||||||||||||||| Sbjct: 723 ccaccgccgccgccaccatg 704
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 agatccaccgccgccgccac 201 |||||||||||||||||||| Sbjct: 380562 agatccaccgccgccgccac 380543
>ref|NM_131525.1| Danio rerio spectrin, beta, erythrocytic (sptb), mRNA Length = 7371 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 aatttcctgcgtgacaaggcccag 364 ||||||||||||||| |||||||| Sbjct: 3058 aatttcctgcgtgacgaggcccag 3081
>gb|AC093954.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1097_A12, complete sequence Length = 88725 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ccaccgccgccgccaccatg 205 |||||||||||||||||||| Sbjct: 21317 ccaccgccgccgccaccatg 21336
>gb|AC016586.9| Homo sapiens chromosome 19 clone CTD-2622I13, complete sequence Length = 205642 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 cccccttccccggtcgccca 111 |||||||||||||||||||| Sbjct: 85744 cccccttccccggtcgccca 85725 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,005,472 Number of Sequences: 3902068 Number of extensions: 5005472 Number of successful extensions: 131780 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 129537 Number of HSP's gapped (non-prelim): 2228 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)