ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY532594.1| Triticum aestivum minichromosomal maintenance fac... 545 e-152
2gb|AY532593.1| Triticum aestivum minichromosomal maintenance fac... 436 e-119
3dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 1e-46
4gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome... 188 9e-45
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 188 9e-45
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 188 9e-45
7gb|BT015953.1| Drosophila melanogaster SD09647 full insert cDNA 42 1.3
8gb|BT025193.1| Drosophila melanogaster FI01127 full insert cDNA 42 1.3
9ref|XM_883457.1| Leishmania major strain Friedlin hypothetical p... 42 1.3
10emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 42 1.3
11gb|AY861166.1| Cottus gobio microsatellite Cott105 sequence 42 1.3
12emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.3
13gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell... 42 1.3
14ref|NM_132004.2| Drosophila melanogaster CG4136-RA (CG4136), mRNA 42 1.3
15gb|AY070708.1| Drosophila melanogaster SD01032 full length cDNA 42 1.3
16gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.3
17emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; c... 42 1.3
18ref|NM_209563.1| Eremothecium gossypii ADR114Cp (ADR114C), mRNA 42 1.3
19gb|AE003434.4| Drosophila melanogaster chromosome X, section 18 ... 42 1.3
20gb|AC122486.4| Mus musculus BAC clone RP24-380B9 from 12, comple... 42 1.3
21dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone... 42 1.3
22ref|NM_196662.1| Oryza sativa (japonica cultivar-group) contains... 40 5.0
23ref|NM_193891.1| Oryza sativa (japonica cultivar-group), predic... 40 5.0
24ref|NM_189357.1| Oryza sativa (japonica cultivar-group), predic... 40 5.0
25gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
26gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
27gb|AY641547.1| Halomonas maura nitrate-reductase operon, complet... 40 5.0
28gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
29gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 5.0
30ref|XM_755863.1| Ustilago maydis 521 hypothetical protein (UM048... 40 5.0
31gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosom... 40 5.0
32ref|XM_380438.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 5.0
33ref|XM_858301.1| PREDICTED: Canis familiaris similar to Retinobl... 40 5.0
34ref|XM_535303.2| PREDICTED: Canis familiaris similar to Retinobl... 40 5.0
35ref|XM_506093.1| Yarrowia lipolytica CLIB122, YALI0F31383g predi... 40 5.0
36ref|XM_785070.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.0
37emb|BX011524.1|CNS08H20 Single read from an extremity of a full-... 40 5.0
38dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
39dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
40dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
41dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
42dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
43dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
44ref|XM_222159.3| PREDICTED: Rattus norvegicus zinc finger, CCHC ... 40 5.0
45gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.0
46dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 5.0
47dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
48dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
49dbj|AK105946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
50emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chr... 40 5.0
51gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
52emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 5.0 
>gb|AY532594.1| Triticum aestivum minichromosomal maintenance factor (MCM2) mRNA,
           complete cds
          Length = 2923

 Score =  545 bits (275), Expect = e-152
 Identities = 317/330 (96%), Gaps = 1/330 (0%)
 Strand = Plus / Plus

                                                                       
Query: 47  cacgcctcctccacaggacccttctcggagcccgcggatggacgactcggagaacaacgc 106
           ||||| |||||||||||| ||| ||| || ||||||||||||||||||||||||||||||
Sbjct: 4   cacgcgtcctccacaggagcctcctccga-cccgcggatggacgactcggagaacaacgc 62

                                                                       
Query: 107 gccgtcgaccccgggctcgccgggtttcagcaccgaccggctgccgcccaacaccaccac 166
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 63  gccgtcgaccccgggctcgccgggcttcagcaccgaccggctgccgcccaacaccaccac 122

                                                                       
Query: 167 cagccgcggcgccaccgacccgtcctcctactcggacgacgatggcgaggcggaggtcga 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cagccgcggcgccaccgacccgtcctcctactcggacgacgatggcgaggcggaggtcga 182

                                                                       
Query: 227 ccccaatgtgctccccgaggacgacggcgccaccgttatccgcgacgaggaggaagacga 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ccccaatgtgctccccgaggacgacggcgccaccgttatccgcgacgaggaggaagacga 242

                                                                       
Query: 287 cggggaagacctcttcaacgacgactacctcnatgattaccggagaatggatgagcagga 346
            ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 243 tggggaggacctcttcaacgacgactacctcaatgattaccgaagaatggatgagcagga 302

                                         
Query: 347 tcactatgagtccgttgggttagatgactc 376
           ||| |||||||| ||||||||||| |||||
Sbjct: 303 tcagtatgagtcggttgggttagacgactc 332
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>gb|AY532593.1| Triticum aestivum minichromosomal maintenance factor (MCM2) gene,
            exons 1 through 18 and complete sequence
          Length = 8809

 Score =  436 bits (220), Expect = e-119
 Identities = 229/232 (98%)
 Strand = Plus / Plus

                                                                        
Query: 86   ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccg 145
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2395 ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggcttcagcaccgaccg 2454

                                                                        
Query: 146  gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacga 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2455 gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacga 2514

                                                                        
Query: 206  cgatggcgaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttat 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515 cgatggcgaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttat 2574

                                                                
Query: 266  ccgcgacgaggaggaagacgacggggaagacctcttcaacgacgactacctc 317
            ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 2575 ccgcgacgaggaggaagacgatggggaggacctcttcaacgacgactacctc 2626



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                  
Query: 323  ttaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactc 376
            |||||| |||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 3388 ttaccgaagaatggatgagcaggatcagtatgagtcggttgggttagacgactc 3441



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                        
Query: 4    attccccccttcccgccgaaaccctagcctcatctcgccaccgcacgcctcctccacagg 63
            |||||||||||||||||||||||||||||||  | | |  || ||||| |||||||||||
Sbjct: 2199 attccccccttcccgccgaaaccctagcctcggcgcacagccacacgcgtcctccacagg 2258

                                    
Query: 64   acccttctcggagcccgcggatgg 87
            | ||| ||| || |||||||||||
Sbjct: 2259 agcctcctccgaccccgcggatgg 2282
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>dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N01, full
           insert sequence
          Length = 3214

 Score =  194 bits (98), Expect = 1e-46
 Identities = 119/126 (94%)
 Strand = Plus / Plus

                                                                       
Query: 83  gatggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccga 142
           |||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 83  gatggatgactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacaga 142

                                                                       
Query: 143 ccggctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcgga 202
           | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 caggctgccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcgga 202

                 
Query: 203 cgacga 208
           ||||||
Sbjct: 203 cgacga 208



 Score =  161 bits (81), Expect = 2e-36
 Identities = 144/164 (87%), Gaps = 6/164 (3%)
 Strand = Plus / Plus

                                                                       
Query: 213 gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 272
           |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 234 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 287

                                                                       
Query: 273 gaggaggaagacgacggggaagacctcttcaacgacgactacctcnatgattaccggaga 332
           |||||||| || |||||||| ||||||||||||||| |||||||| ||||||||||||| 
Sbjct: 288 gaggaggaggaggacggggaggacctcttcaacgacaactacctcgatgattaccggagg 347

                                                       
Query: 333 atggatgagcaggatcactatgagtccgttgggttagatgactc 376
           |||||||||||||| || ||||| || |||||||||||||||||
Sbjct: 348 atggatgagcaggaccagtatgaatcggttgggttagatgactc 391
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>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0057E15, complete sequence
          Length = 149035

 Score =  188 bits (95), Expect = 9e-45
 Identities = 113/119 (94%)
 Strand = Plus / Plus

                                                                         
Query: 90    gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 149
             |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 97266 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 97325

                                                                        
Query: 150   ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 208
             ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97326 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 97384



 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                         
Query: 213   gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 272
             |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 97410 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 97463

                                                          
Query: 273   gaggaggaagacgacggggaagacctcttcaacgacgactacctc 317
             |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 97464 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 97508



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                      
Query: 320   tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactc 376
             |||||||||||| |||||||||||||| || ||||| || |||||||||||||||||
Sbjct: 98224 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactc 98280
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  188 bits (95), Expect = 9e-45
 Identities = 113/119 (94%)
 Strand = Plus / Plus

                                                                            
Query: 90       gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 149
                |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16456667 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16456726

                                                                           
Query: 150      ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 208
                ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16456727 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16456785



 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                            
Query: 213      gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 272
                |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 16456811 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 16456864

                                                             
Query: 273      gaggaggaagacgacggggaagacctcttcaacgacgactacctc 317
                |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 16456865 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 16456909



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                         
Query: 320      tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactc 376
                |||||||||||| |||||||||||||| || ||||| || |||||||||||||||||
Sbjct: 16457625 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactc 16457681
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  188 bits (95), Expect = 9e-45
 Identities = 113/119 (94%)
 Strand = Plus / Plus

                                                                            
Query: 90       gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 149
                |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16547671 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16547730

                                                                           
Query: 150      ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 208
                ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16547731 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16547789



 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                            
Query: 213      gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 272
                |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 16547815 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 16547868

                                                             
Query: 273      gaggaggaagacgacggggaagacctcttcaacgacgactacctc 317
                |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 16547869 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 16547913



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                         
Query: 320      tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactc 376
                |||||||||||| |||||||||||||| || ||||| || |||||||||||||||||
Sbjct: 16548629 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactc 16548685
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>gb|BT015953.1| Drosophila melanogaster SD09647 full insert cDNA
          Length = 2972

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 167  cagccgcggcgccaccgacccgtcctcct 195
            ||||| ||||||||||||| |||||||||
Sbjct: 1752 cagccacggcgccaccgactcgtcctcct 1724
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>gb|BT025193.1| Drosophila melanogaster FI01127 full insert cDNA
          Length = 2971

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 167  cagccgcggcgccaccgacccgtcctcct 195
            ||||| ||||||||||||| |||||||||
Sbjct: 1752 cagccacggcgccaccgactcgtcctcct 1724
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>ref|XM_883457.1| Leishmania major strain Friedlin hypothetical protein (P1105.02)
           partial mRNA
          Length = 507

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 196 actcggacgacgatggcgagg 216
           |||||||||||||||||||||
Sbjct: 479 actcggacgacgatggcgagg 499
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>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 196   actcggacgacgatggcgagg 216
             |||||||||||||||||||||
Sbjct: 28850 actcggacgacgatggcgagg 28830
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>gb|AY861166.1| Cottus gobio microsatellite Cott105 sequence
          Length = 711

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 268 gcgacgaggaggaagacgacggggaagac 296
           ||||||||||||||||||| | |||||||
Sbjct: 297 gcgacgaggaggaagacgaggaggaagac 269
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 203     cgacgatggcgaggcggaggt 223
               |||||||||||||||||||||
Sbjct: 1468047 cgacgatggcgaggcggaggt 1468027
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>gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 163764

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 167   cagccgcggcgccaccgacccgtcctcct 195
             ||||| ||||||||||||| |||||||||
Sbjct: 58418 cagccacggcgccaccgactcgtcctcct 58390
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>ref|NM_132004.2| Drosophila melanogaster CG4136-RA (CG4136), mRNA
          Length = 2983

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 167  cagccgcggcgccaccgacccgtcctcct 195
            ||||| ||||||||||||| |||||||||
Sbjct: 1765 cagccacggcgccaccgactcgtcctcct 1737
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>gb|AY070708.1| Drosophila melanogaster SD01032 full length cDNA
          Length = 2647

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 167  cagccgcggcgccaccgacccgtcctcct 195
            ||||| ||||||||||||| |||||||||
Sbjct: 1429 cagccacggcgccaccgactcgtcctcct 1401
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>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
              complete sequence
          Length = 1466886

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 273    gaggaggaagacgacggggaa 293
              |||||||||||||||||||||
Sbjct: 909354 gaggaggaagacgacggggaa 909334
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>emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; clone MWG0904.rev
          Length = 416

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 158 caccaccaccagccgcggcgccacc 182
           |||||||||||||| ||||||||||
Sbjct: 305 caccaccaccagccacggcgccacc 281
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>ref|NM_209563.1| Eremothecium gossypii ADR114Cp (ADR114C), mRNA
          Length = 2085

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 273 gaggaggaagacgacggggaa 293
           |||||||||||||||||||||
Sbjct: 154 gaggaggaagacgacggggaa 174
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>gb|AE003434.4| Drosophila melanogaster chromosome X, section 18 of 74 of the complete
              sequence
          Length = 303928

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 167    cagccgcggcgccaccgacccgtcctcct 195
              ||||| ||||||||||||| |||||||||
Sbjct: 287799 cagccacggcgccaccgactcgtcctcct 287771
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>gb|AC122486.4| Mus musculus BAC clone RP24-380B9 from 12, complete sequence
          Length = 128253

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 333    atggatgagcaggatcactat 353
              |||||||||||||||||||||
Sbjct: 108319 atggatgagcaggatcactat 108339
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>dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23A02, TM0306,
             complete sequence
          Length = 62713

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 11    ccttcccgccgaaaccctagcctca 35
             |||||||| ||||||||||||||||
Sbjct: 47783 ccttcccgtcgaaaccctagcctca 47807
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>ref|NM_196662.1| Oryza sativa (japonica cultivar-group) contains similarity to
           gypsy-type retrotransposon (OSJNBa0012D19.23), mRNA
          Length = 1998

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 273 gaggaggaagacgacgggga 292
           ||||||||||||||||||||
Sbjct: 868 gaggaggaagacgacgggga 887
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>ref|NM_193891.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 960

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 269 cgacgaggaggaagacgacg 288
           ||||||||||||||||||||
Sbjct: 636 cgacgaggaggaagacgacg 655
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>ref|NM_189357.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 176 cgccaccgacccgtcctcct 195
           ||||||||||||||||||||
Sbjct: 843 cgccaccgacccgtcctcct 824
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>gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0012D19,
              complete sequence
          Length = 153276

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    gaggaggaagacgacgggga 292
              ||||||||||||||||||||
Sbjct: 121853 gaggaggaagacgacgggga 121872
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>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08,
              complete sequence
          Length = 115026

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    cgacgaggaggaagacgacg 288
              ||||||||||||||||||||
Sbjct: 107836 cgacgaggaggaagacgacg 107817
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>gb|AY641547.1| Halomonas maura nitrate-reductase operon, complete sequence
          Length = 8823

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  cgaggacgacggcgccaccg 261
            ||||||||||||||||||||
Sbjct: 3486 cgaggacgacggcgccaccg 3505
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>gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1345_B12,
             complete sequence
          Length = 119909

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   cgacgaggaggaagacgacg 288
             ||||||||||||||||||||
Sbjct: 22028 cgacgaggaggaagacgacg 22009
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    acaccaccaccagccgcggc 176
              ||||||||||||||||||||
Sbjct: 653840 acaccaccaccagccgcggc 653821
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>ref|XM_755863.1| Ustilago maydis 521 hypothetical protein (UM04809.1) partial mRNA
          Length = 1827

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 269 cgacgaggaggaagacgacggggaagac 296
           |||||| ||||||||||||| |||||||
Sbjct: 864 cgacgacgaggaagacgacgaggaagac 891
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>gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosome 8, complete sequence
          Length = 177226

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ctcctccacaggacccttct 71
             ||||||||||||||||||||
Sbjct: 72162 ctcctccacaggacccttct 72181
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>ref|XM_380438.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00262.1)
           partial mRNA
          Length = 1035

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 269 cgacgaggaggaagacgacg 288
           ||||||||||||||||||||
Sbjct: 402 cgacgaggaggaagacgacg 421
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>ref|XM_858301.1| PREDICTED: Canis familiaris similar to Retinoblastoma-like protein
           2 (130 kDa retinoblastoma-associated protein) (PRB2)
           (P130) (RBR-2), transcript variant 3 (LOC478127), mRNA
          Length = 2389

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 273 gaggaggaagacgacgggga 292
           ||||||||||||||||||||
Sbjct: 153 gaggaggaagacgacgggga 172
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>ref|XM_535303.2| PREDICTED: Canis familiaris similar to Retinoblastoma-like protein
           2 (130 kDa retinoblastoma-associated protein) (PRB2)
           (P130) (RBR-2), transcript variant 1 (LOC478127), mRNA
          Length = 4080

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 273 gaggaggaagacgacgggga 292
           ||||||||||||||||||||
Sbjct: 153 gaggaggaagacgacgggga 172
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>ref|XM_506093.1| Yarrowia lipolytica CLIB122, YALI0F31383g predicted mRNA
          Length = 1260

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 273  gaggaggaagacgacggggaagac 296
            |||||||||||||||| |||||||
Sbjct: 1108 gaggaggaagacgacgaggaagac 1131
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>ref|XM_785070.1| PREDICTED: Strongylocentrotus purpuratus similar to Hypothetical
            UPF0120 protein DKFZp564C186 homolog (LOC585237), mRNA
          Length = 2835

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 281  agacgacggggaagacctcttcaa 304
            |||||||| |||||||||||||||
Sbjct: 2055 agacgacgaggaagacctcttcaa 2078
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>emb|BX011524.1|CNS08H20 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA18BG03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 927

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 269 cgacgaggaggaagacgacggggaagac 296
           ||||||||||| | ||||||||||||||
Sbjct: 795 cgacgaggagggaaacgacggggaagac 768
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 273      gaggaggaagacgacgggga 292
                ||||||||||||||||||||
Sbjct: 15063234 gaggaggaagacgacgggga 15063253
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 269      cgacgaggaggaagacgacg 288
                ||||||||||||||||||||
Sbjct: 22276608 cgacgaggaggaagacgacg 22276589
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 269      cgacgaggaggaagacgacg 288
                ||||||||||||||||||||
Sbjct: 26869596 cgacgaggaggaagacgacg 26869577
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 176      cgccaccgacccgtcctcct 195
                ||||||||||||||||||||
Sbjct: 42357219 cgccaccgacccgtcctcct 42357238



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 269      cgacgaggaggaagacgacg 288
                ||||||||||||||||||||
Sbjct: 15675773 cgacgaggaggaagacgacg 15675792
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>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0401G10
          Length = 160704

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    cgccaccgacccgtcctcct 195
              ||||||||||||||||||||
Sbjct: 129176 cgccaccgacccgtcctcct 129195
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>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0483G10
          Length = 190721

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   cgccaccgacccgtcctcct 195
             ||||||||||||||||||||
Sbjct: 16557 cgccaccgacccgtcctcct 16576
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>ref|XM_222159.3| PREDICTED: Rattus norvegicus zinc finger, CCHC domain containing 8
           (predicted) (Zcchc8_predicted), mRNA
          Length = 2675

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 269 cgacgaggaggaagacgacg 288
           ||||||||||||||||||||
Sbjct: 162 cgacgaggaggaagacgacg 181
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 164     caccagccgcggcgccaccgacccgtcc 191
               ||||||||||| |||||||||| |||||
Sbjct: 2859792 caccagccgcgccgccaccgacgcgtcc 2859819



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     caccaccaccagccgcggcg 177
               ||||||||||||||||||||
Sbjct: 1645167 caccaccaccagccgcggcg 1645186
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 78      ccgcggatggacgactcgga 97
               ||||||||||||||||||||
Sbjct: 2043809 ccgcggatggacgactcgga 2043828
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>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0566A10
          Length = 174367

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   cgacgaggaggaagacgacg 288
             ||||||||||||||||||||
Sbjct: 55031 cgacgaggaggaagacgacg 55012
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>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0416G11
          Length = 138858

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    cgacgaggaggaagacgacg 288
              ||||||||||||||||||||
Sbjct: 113670 cgacgaggaggaagacgacg 113689
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>dbj|AK105946.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C05, full
           insert sequence
          Length = 1367

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 269 cgacgaggaggaagacgacg 288
           ||||||||||||||||||||
Sbjct: 978 cgacgaggaggaagacgacg 997
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>emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chromosome 8, complete
              sequence
          Length = 183975

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     ctcctccacaggacccttct 71
              ||||||||||||||||||||
Sbjct: 181578 ctcctccacaggacccttct 181597
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 273      gaggaggaagacgacgggga 292
                ||||||||||||||||||||
Sbjct: 15071475 gaggaggaagacgacgggga 15071494
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 273     gaggaggaagacgacggggaagac 296
               |||||||||||||||| |||||||
Sbjct: 3903697 gaggaggaagacgacgaggaagac 3903674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,596,760
Number of Sequences: 3902068
Number of extensions: 2596760
Number of successful extensions: 62884
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62069
Number of HSP's gapped (non-prelim): 814
length of query: 376
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 354
effective length of database: 17,147,199,772
effective search space: 6070108719288
effective search space used: 6070108719288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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