>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
 Frame = +3

Query: 60  HPPRPRFSAPGPKHGSAKTSTHA------SHGQAPD*PDRSSGRRSEPASEWR 200
           HPP P + AP P HG     +H       SHG AP     +  R   P S  R
Sbjct: 117 HPP-PSYGAPPPSHGPGHLPSHGQRPPSPSHGHAPPSGGHTPPRGQHPPSHRR 168

>KCTD2_HUMAN (Q14681) Potassium channel tetramerisation domain-containing|
           protein 2
          Length = 263

 Score = 26.2 bits (56), Expect(2) = 1.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 242 PLPTSRGRPATTMASPLARWLAPPSRA 162
           P P   GRPA  +A  L     PP RA
Sbjct: 39  PTPRGHGRPAAAVAQRLEPGPGPPERA 65



 Score = 22.7 bits (47), Expect(2) = 1.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 94  GPGAEKRGRGGCCSRW 47
           GPG  +R  GG  +RW
Sbjct: 58  GPGPPERAGGGGAARW 73

>SET2_CAEEL (Q18221) Protein set-2|
          Length = 1507

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
 Frame = +3

Query: 24  PSLGAVACHLLQHPPRPRFSAPGPKHGSAKTSTHASHGQAPD*P---DRSSG-----RRS 179
           P  G V    L   P P  S PGP  G A         ++P+ P   +R SG     +R 
Sbjct: 635 PQPGLVQIAALSAAPEPFSSIPGPPPGPAPIQEDVGRAESPEKPSLSERFSGIFGPTQRE 694

Query: 180 EPA 188
           EPA
Sbjct: 695 EPA 697

>TNKS1_HUMAN (O95271) Tankyrase 1 (EC 2.4.2.30) (TANK1) (Tankyrase I) (TNKS-1)|
           (TRF1-interacting ankyrin-related ADP-ribose polymerase)
          Length = 1327

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 248 PPPLPTSRG-RPATTMASPLARWLAP 174
           PPP P S G  P TT ASP A  LAP
Sbjct: 30  PPPPPLSPGLAPGTTPASPTASGLAP 55

>DPOL_WHV2 (P06275) P protein [Includes: DNA-directed DNA polymerase (EC|
           2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 883

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 242 PLPTSRGRPATTMASPLARWLAPP---SRAPVRSVWGLAVR 129
           PLP  R RP TT    ++ W A P    RAPVR  W   V+
Sbjct: 838 PLPRLRLRPQTTR---ISLWAASPPVSPRAPVRVAWSSPVQ 875

>PIV6_ADE40 (P48309) Minor capsid protein 6 precursor (Minor capsid protein VI)|
           [Contains: Protease cofactor]
          Length = 267

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
 Frame = -3

Query: 248 PPPLPTSRGRPATTMASPLARWLAP------PSRAPVRSVW 144
           PPP+PT    PA T+ + ++R  AP      P+R P  + W
Sbjct: 206 PPPVPTVPPMPAPTLGTAVSRPTAPTVAVATPARRPRGANW 246

>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3726

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 248  PPPLPTSRGRPATTMASPLARWLAPPSRAP 159
            PPPLPT+  +PA+  A P +   APP  +P
Sbjct: 2055 PPPLPTAPPQPASAPAIPAS---APPITSP 2081

>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3703

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 248  PPPLPTSRGRPATTMASPLARWLAPPSRAP 159
            PPPLP +  +PA+T A P +   APP  +P
Sbjct: 2048 PPPLPAAPPQPASTPAIPAS---APPITSP 2074

>CI066_HUMAN (Q5T8R8) Protein C9orf66|
          Length = 295

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -3

Query: 248 PPPLPTSRGRPATTMASPLARW----LAPPSRAPVRSVWGLAVR 129
           PPP P   G P    A P  R     L P S AP+ +  GL+ R
Sbjct: 70  PPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGR 113

>SSPO_BOVIN (P98167) SCO-spondin (Fragment)|
          Length = 867

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 251 HPPPLPTSRGRPATTMASPLARWLAPPSRAPVRSVWGLA 135
           HP   P     P+  + +PL  +L PP   P  S  GLA
Sbjct: 313 HPMATPVPAPTPSPQIGAPLITYLLPPPGDPCYSPLGLA 351

>MOTD_RHIME (Q52964) Chemotaxis protein motD (Motility protein D)|
          Length = 475

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 112 KQVHTHRTARPQTDLTGARDGGASQRASGDAIVVAGRPREVGRGG 246
           + + T   +RP   L+      A   A G+AI  AGR R  G+GG
Sbjct: 6   ENLRTSAASRPAQSLSVRGQPEAESGAFGEAIADAGRRRTQGQGG 50

>UNG_CHRVO (Q7P1I1) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 238

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = -3

Query: 251 HPPPLPTSRGRPATTMASPLARWLAPPSRAPVRSVWGLA 135
           HP PL  SRG       S +  WL    R PVR  W  A
Sbjct: 194 HPSPLSASRGFHGCRHFSQVNAWLIARGRQPVR--WATA 230

>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3|
          Length = 623

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 51  LLQHPPRPRFSAPGPKHGSAKTSTHASH 134
           L QHP RP+  AP P+  S     H+ H
Sbjct: 391 LPQHPQRPQHPAPHPQQHSQLQPPHSQH 418

>ZCHC8_PONPY (Q5R789) Zinc finger CCHC domain-containing protein 8|
          Length = 704

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 78  FSAPGPKHGSAKTSTHASHGQAPD*PDRSSGRRSEPA 188
           F APG K G+ ++S+H+S G +P    + S     PA
Sbjct: 405 FQAPGVKSGNKRSSSHSSPG-SPKKQKKESNSAGSPA 440

>Y1R1_DROME (P16424) Hypothetical 50 kDa protein in type I retrotransposable|
           element R1DM (ORF 1)
          Length = 471

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
 Frame = -3

Query: 248 PPPLPTSRGRPATTMAS--PLARWLAPPSRAPVRSVWGLAVRC 126
           PPP P S+       A   P    +A P    VR  W   V+C
Sbjct: 195 PPPPPPSKANTTAANAPQMPQVAPIAAPRTTKVRETWSAVVKC 237

>PA24_LATCO (Q8UUH9) Phospholipase A2 PC9 precursor (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase)
          Length = 155

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 154 GQSGAWPCDACVLVFADPCFGPGAEKRGRGGCCSRW 47
           GQ+G   C   V ++   CF PGA + G+G  C R+
Sbjct: 80  GQAGKKGCIPFVTLYNFGCF-PGAPQCGKGNTCQRF 114

>DYN3_HUMAN (Q9UQ16) Dynamin-3 (EC 3.6.5.5) (Dynamin, testicular) (T-dynamin)|
          Length = 859

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 248 PPPLPTSRGRPATTMASPLARWLAPPSRAP 159
           PPP PT++ RP  T+++PLAR  +    AP
Sbjct: 760 PPPSPTTQRRP--TLSAPLARPTSGRGPAP 787

>H2BX_HUMAN (Q8N257) Histone H2B type 12|
          Length = 125

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = +3

Query: 66  PRPRFSAPGPKHGSAKTSTHASHGQAPD*PDRSSGRR 176
           P P  SAP PK GS K  T A   Q  D   R  GR+
Sbjct: 1   PDPSKSAPAPKKGSKKAVTKA---QKKDGKKRKRGRK 34


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,222,052
Number of Sequences: 219361
Number of extensions: 788825
Number of successful extensions: 3716
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3708
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)