ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 66 6e-08
2dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic D... 66 6e-08
3gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosom... 46 0.053
4gb|AC117238.3| Mus musculus BAC clone RP24-82N17 from 1, complet... 46 0.053
5emb|AL589864.14| Human DNA sequence from clone RP13-63P20 on chr... 46 0.053
6gb|AC151534.2| Mus musculus BAC clone RP23-446E13 from 7, comple... 46 0.053
7gb|AC164160.5| Mus musculus BAC clone RP23-343P15 from chromosom... 46 0.053
8emb|AL611951.11| Mouse DNA sequence from clone RP23-265O1 on chr... 44 0.21
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.21
10dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.21
11emb|AL591970.10| Mouse DNA sequence from clone RP23-190L21 on ch... 44 0.21
12gb|AC122528.3| Mus musculus BAC clone RP24-506F15 from chromosom... 42 0.83
13emb|BX957359.10| Zebrafish DNA sequence from clone DKEY-234E8 in... 42 0.83
14gb|AE014304.1| Homo sapiens chromosome 13q34 schizophrenia regio... 42 0.83
15emb|AL161771.17| Human DNA sequence from clone RP11-11L8 on chro... 42 0.83
16dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.83
17gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) ch... 42 0.83
18emb|BX005082.7| Zebrafish DNA sequence from clone DKEY-148A17 in... 42 0.83
19dbj|AB018119.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 0.83
20dbj|AK120481.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.83
21dbj|AK066993.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.83
22emb|CT009706.20| Mouse DNA sequence from clone RP23-131H17 on ch... 42 0.83
23gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.83
24gb|AC138604.5| Mus musculus BAC clone RP24-236J11 from chromosom... 40 3.3
25gb|AC124828.14| Mus musculus chromosome 5, clone RP24-126A19, co... 40 3.3
26gb|AC167973.4| Mus musculus BAC clone RP23-453B4 from chromosome... 40 3.3
27ref|XM_468835.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.3
28gb|AC147651.4| Homo sapiens BAC clone RP13-689E11 from 7, comple... 40 3.3
29gb|AC147803.2| Oryza sativa chromosome 3 BAC OSJNBb0034P05 genom... 40 3.3
30gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.3
31gb|AC100755.8| Homo sapiens chromosome 15, clone RP11-262J5, com... 40 3.3
32gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genom... 40 3.3
33gb|AC121909.3| Mus musculus BAC clone RP24-179L9 from chromosome... 40 3.3
34gb|AC102847.3| Mus musculus, clone RP24-406I1, complete sequence 40 3.3
35emb|AL162457.11| Human DNA sequence from clone RP11-429E11 on ch... 40 3.3
36emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4,... 40 3.3
37emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4,... 40 3.3
38gb|AC100756.4| Homo sapiens chromosome 18, clone RP11-529J17, co... 40 3.3
39gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, comple... 40 3.3
40dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
41dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
42gb|AC109338.17| Homo sapiens chromosome 15, clone RP11-228G18, c... 40 3.3
43dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
44dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
45dbj|AK108997.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.3
46dbj|AK064637.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.3
47gb|AC151716.5| Mus musculus BAC clone RP23-316A23 from 5, comple... 40 3.3
48gb|AC058786.24| Mus musculus strain C57BL/6J chromosome 4 clone ... 40 3.3
49emb|AL513356.8| Mouse DNA sequence from clone RP23-193O17 on chr... 40 3.3
50emb|AL732476.12| Mouse DNA sequence from clone RP23-131A6 on chr... 40 3.3
51gb|AC073446.16| Homo sapiens chromosome 15, clone RP11-757E13, c... 40 3.3 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 49/53 (92%), Gaps = 1/53 (1%)
 Strand = Plus / Plus

                                                                    
Query: 30      ctaggtgccgttgcgtgccacctactacaaca-tcctccacgccctcgctttt 81
               |||| ||||||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 1833030 ctagctgccgttgcgtgccagctactacaacacccctccacgccctcgctttt 1833082



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 225      gcgggaggtggggagaggaggagg 248
                ||||||| ||||||||||||||||
Sbjct: 29277139 gcgggagatggggagaggaggagg 29277162
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>dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0083M16
          Length = 179428

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 49/53 (92%), Gaps = 1/53 (1%)
 Strand = Plus / Plus

                                                                  
Query: 30    ctaggtgccgttgcgtgccacctactacaaca-tcctccacgccctcgctttt 81
             |||| ||||||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 74412 ctagctgccgttgcgtgccagctactacaacacccctccacgccctcgctttt 74464
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>gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosome 1, complete sequence
          Length = 183428

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 229   gaggtggggagaggaggaggatg 251
             |||||||||||||||||||||||
Sbjct: 31319 gaggtggggagaggaggaggatg 31297
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>gb|AC117238.3| Mus musculus BAC clone RP24-82N17 from 1, complete sequence
          Length = 214280

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 229    gaggtggggagaggaggaggatg 251
              |||||||||||||||||||||||
Sbjct: 155356 gaggtggggagaggaggaggatg 155334
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>emb|AL589864.14| Human DNA sequence from clone RP13-63P20 on chromosome 10, complete
             sequence
          Length = 80842

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 227   gggaggtggggagaggaggagga 249
             |||||||||||||||||||||||
Sbjct: 47321 gggaggtggggagaggaggagga 47343
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>gb|AC151534.2| Mus musculus BAC clone RP23-446E13 from 7, complete sequence
          Length = 184053

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 227   gggaggtggggagaggaggagga 249
             |||||||||||||||||||||||
Sbjct: 75008 gggaggtggggagaggaggagga 75030
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>gb|AC164160.5| Mus musculus BAC clone RP23-343P15 from chromosome 7, complete sequence
          Length = 235030

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 227    gggaggtggggagaggaggagga 249
              |||||||||||||||||||||||
Sbjct: 232369 gggaggtggggagaggaggagga 232347
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>emb|AL611951.11| Mouse DNA sequence from clone RP23-265O1 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 191715

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 228    ggaggtggggagaggaggagga 249
              ||||||||||||||||||||||
Sbjct: 176058 ggaggtggggagaggaggagga 176037
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 219      gcggccgcgggaggtggggaga 240
                ||||||||||||||||||||||
Sbjct: 31445720 gcggccgcgggaggtggggaga 31445741
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>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0078N11
          Length = 155168

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 219   gcggccgcgggaggtggggaga 240
             ||||||||||||||||||||||
Sbjct: 81117 gcggccgcgggaggtggggaga 81138
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>emb|AL591970.10| Mouse DNA sequence from clone RP23-190L21 on chromosome 2, complete
              sequence
          Length = 165908

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 228    ggaggtggggagaggaggagga 249
              ||||||||||||||||||||||
Sbjct: 149344 ggaggtggggagaggaggagga 149323
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>gb|AC122528.3| Mus musculus BAC clone RP24-506F15 from chromosome 9, complete sequence
          Length = 142071

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 228   ggaggtggggagaggaggaggatgg 252
             |||||||||| ||||||||||||||
Sbjct: 63504 ggaggtggggggaggaggaggatgg 63528
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>emb|BX957359.10| Zebrafish DNA sequence from clone DKEY-234E8 in linkage group 7,
             complete sequence
          Length = 180396

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 227   gggaggtggggagaggaggag 247
             |||||||||||||||||||||
Sbjct: 53555 gggaggtggggagaggaggag 53575
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>gb|AE014304.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 1
             of 11 of the complete sequence
          Length = 250029

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 227   gggaggtggggagaggaggag 247
             |||||||||||||||||||||
Sbjct: 21449 gggaggtggggagaggaggag 21469
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>emb|AL161771.17| Human DNA sequence from clone RP11-11L8 on chromosome 13 Contains the
            SLC10A2 gene for solute carrier family 10 (sodium/bile
            acid cotransporter family, member 2, complete sequence
          Length = 171132

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 227  gggaggtggggagaggaggag 247
            |||||||||||||||||||||
Sbjct: 2620 gggaggtggggagaggaggag 2640
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 229      gaggtggggagaggaggagga 249
                |||||||||||||||||||||
Sbjct: 15666803 gaggtggggagaggaggagga 15666823
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>gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0094K20,
              complete sequence
          Length = 193119

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 229    gaggtggggagaggaggagga 249
              |||||||||||||||||||||
Sbjct: 154169 gaggtggggagaggaggagga 154189
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>emb|BX005082.7| Zebrafish DNA sequence from clone DKEY-148A17 in linkage group 7,
             complete sequence
          Length = 151799

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 227   gggaggtggggagaggaggag 247
             |||||||||||||||||||||
Sbjct: 19522 gggaggtggggagaggaggag 19542
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>dbj|AB018119.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN2
          Length = 62927

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 148   actgacctgaccggagctcgggacg 172
             |||||||||||||||||| ||||||
Sbjct: 44827 actgacctgaccggagctagggacg 44851
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>dbj|AK120481.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112B17, full
           insert sequence
          Length = 579

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 229 gaggtggggagaggaggagga 249
           |||||||||||||||||||||
Sbjct: 104 gaggtggggagaggaggagga 124
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>dbj|AK066993.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091F02, full
           insert sequence
          Length = 3411

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 229 gaggtggggagaggaggagga 249
           |||||||||||||||||||||
Sbjct: 136 gaggtggggagaggaggagga 156
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>emb|CT009706.20| Mouse DNA sequence from clone RP23-131H17 on chromosome 9, complete
             sequence
          Length = 215322

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 227   gggaggtggggagaggaggag 247
             |||||||||||||||||||||
Sbjct: 53964 gggaggtggggagaggaggag 53984
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 229      gaggtggggagaggaggagga 249
                |||||||||||||||||||||
Sbjct: 15675044 gaggtggggagaggaggagga 15675064
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>gb|AC138604.5| Mus musculus BAC clone RP24-236J11 from chromosome 15, complete
             sequence
          Length = 196777

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   gcgggaggtggggagaggag 244
             ||||||||||||||||||||
Sbjct: 73852 gcgggaggtggggagaggag 73833
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>gb|AC124828.14| Mus musculus chromosome 5, clone RP24-126A19, complete sequence
          Length = 188504

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 175   ggagcgagccagcgagcgagtggc 198
             ||||||||| ||||||||||||||
Sbjct: 17503 ggagcgagcaagcgagcgagtggc 17526
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>gb|AC167973.4| Mus musculus BAC clone RP23-453B4 from chromosome 9, complete sequence
          Length = 182190

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   gaggtggggagaggaggagg 248
             ||||||||||||||||||||
Sbjct: 49637 gaggtggggagaggaggagg 49618
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>ref|XM_468835.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 603

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 230 aggtggggagaggaggagga 249
           ||||||||||||||||||||
Sbjct: 517 aggtggggagaggaggagga 536
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>gb|AC147651.4| Homo sapiens BAC clone RP13-689E11 from 7, complete sequence
          Length = 162139

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 129    tcgcacggccaggccccagactgacctg 156
              |||||||||||||||||| |||| ||||
Sbjct: 118261 tcgcacggccaggccccacactgtcctg 118288
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>gb|AC147803.2| Oryza sativa chromosome 3 BAC OSJNBb0034P05 genomic sequence, complete
             sequence
          Length = 35334

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   aggtggggagaggaggagga 249
             ||||||||||||||||||||
Sbjct: 26973 aggtggggagaggaggagga 26954
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 230      aggtggggagaggaggagga 249
                ||||||||||||||||||||
Sbjct: 18242586 aggtggggagaggaggagga 18242567
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>gb|AC100755.8| Homo sapiens chromosome 15, clone RP11-262J5, complete sequence
          Length = 174177

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   cgcacggccaggccccagactgac 153
             |||||||||||||| |||||||||
Sbjct: 72884 cgcacggccaggcctcagactgac 72907
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>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence,
            complete sequence
          Length = 159579

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  aggtggggagaggaggagga 249
            ||||||||||||||||||||
Sbjct: 9017 aggtggggagaggaggagga 8998
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>gb|AC121909.3| Mus musculus BAC clone RP24-179L9 from chromosome 5, complete sequence
          Length = 155771

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    tggggagaggaggaggatgg 252
              ||||||||||||||||||||
Sbjct: 138293 tggggagaggaggaggatgg 138274
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>gb|AC102847.3| Mus musculus, clone RP24-406I1, complete sequence
          Length = 146259

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    aggtggggagaggaggagga 249
              ||||||||||||||||||||
Sbjct: 113128 aggtggggagaggaggagga 113109
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>emb|AL162457.11| Human DNA sequence from clone RP11-429E11 on chromosome 20 Contains parts
              of the CDH4 gene for retinal cadherin 4 type 1
              (R-cadherin), a novel gene, the gene for a novel protien
              (FLJ40547) and a CpG island, complete sequence
          Length = 130965

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    gaggtggggagaggaggagg 248
              ||||||||||||||||||||
Sbjct: 105227 gaggtggggagaggaggagg 105208
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>emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17,
              complete sequence
          Length = 127259

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    ggaggtggggagaggaggag 247
              ||||||||||||||||||||
Sbjct: 125461 ggaggtggggagaggaggag 125480
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>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02,
             complete sequence
          Length = 173522

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   ggaggtggggagaggaggag 247
             ||||||||||||||||||||
Sbjct: 32114 ggaggtggggagaggaggag 32133
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>gb|AC100756.4| Homo sapiens chromosome 18, clone RP11-529J17, complete sequence
          Length = 173833

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   cgcacggccaggccccagactgac 153
             |||||||||||||| |||||||||
Sbjct: 72539 cgcacggccaggcctcagactgac 72562
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>gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, complete sequence
          Length = 148824

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 225   gcgggaggtggggagaggaggagg 248
             ||||||||||||||| ||||||||
Sbjct: 98151 gcgggaggtggggaggggaggagg 98174
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 228      ggaggtggggagaggaggag 247
                ||||||||||||||||||||
Sbjct: 27601485 ggaggtggggagaggaggag 27601504
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 230      aggtggggagaggaggagga 249
                ||||||||||||||||||||
Sbjct: 18236127 aggtggggagaggaggagga 18236108
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>gb|AC109338.17| Homo sapiens chromosome 15, clone RP11-228G18, complete sequence
          Length = 141868

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   cgcacggccaggccccagactgac 153
             |||||||||||||| |||||||||
Sbjct: 62067 cgcacggccaggcctcagactgac 62090
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>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0692C11
          Length = 169562

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 225   gcgggaggtggggagaggaggagg 248
             ||||||| ||||||||||||||||
Sbjct: 56002 gcgggagatggggagaggaggagg 56025
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>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0684B02
          Length = 132470

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 225    gcgggaggtggggagaggaggagg 248
              ||||||| ||||||||||||||||
Sbjct: 122926 gcgggagatggggagaggaggagg 122949
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>dbj|AK108997.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-G07, full
           insert sequence
          Length = 811

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 230 aggtggggagaggaggagga 249
           ||||||||||||||||||||
Sbjct: 640 aggtggggagaggaggagga 659
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>dbj|AK064637.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A09, full
           insert sequence
          Length = 637

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 228 ggaggtggggagaggaggag 247
           ||||||||||||||||||||
Sbjct: 58  ggaggtggggagaggaggag 39
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>gb|AC151716.5| Mus musculus BAC clone RP23-316A23 from 5, complete sequence
          Length = 193466

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    tggggagaggaggaggatgg 252
              ||||||||||||||||||||
Sbjct: 172589 tggggagaggaggaggatgg 172608
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>gb|AC058786.24| Mus musculus strain C57BL/6J chromosome 4 clone rp23-117o7, complete
             sequence
          Length = 209737

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   cgggaggtggggagaggagg 245
             ||||||||||||||||||||
Sbjct: 80253 cgggaggtggggagaggagg 80272
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>emb|AL513356.8| Mouse DNA sequence from clone RP23-193O17 on chromosome X, complete
             sequence
          Length = 216238

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   gaggtggggagaggaggagg 248
             ||||||||||||||||||||
Sbjct: 82673 gaggtggggagaggaggagg 82692
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>emb|AL732476.12| Mouse DNA sequence from clone RP23-131A6 on chromosome 4, complete
             sequence
          Length = 194554

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 226   cgggaggtggggagaggagg 245
             ||||||||||||||||||||
Sbjct: 25854 cgggaggtggggagaggagg 25835
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>gb|AC073446.16| Homo sapiens chromosome 15, clone RP11-757E13, complete sequence
          Length = 185123

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   cgcacggccaggccccagactgac 153
             |||||||||||||| |||||||||
Sbjct: 87897 cgcacggccaggcctcagactgac 87874


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,281,436
Number of Sequences: 3902068
Number of extensions: 2281436
Number of successful extensions: 54054
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53686
Number of HSP's gapped (non-prelim): 366
length of query: 253
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 231
effective length of database: 17,147,199,772
effective search space: 3961003147332
effective search space used: 3961003147332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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