ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TNPO2_HUMAN (O14787) Transportin-2 (Karyopherin beta-2b) 49 2e-06
2TNPO2_MOUSE (Q99LG2) Transportin-2 (Karyopherin beta-2b) 49 2e-06
3TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopheri... 46 2e-05
4TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopheri... 46 2e-05
5IMB2_YEAST (P38217) Importin beta-2 subunit (Karyopherin beta-2 ... 29 3.2
6NAS2_HORVU (Q9ZQV7) Probable nicotianamine synthase 2 (EC 2.5.1.... 28 5.5
7TCPB_MOUSE (P80314) T-complex protein 1 subunit beta (TCP-1-beta... 28 7.1
8WOX9_ARATH (Q6X7J4) WUSCHEL-related homeobox 9 27 9.3

>TNPO2_HUMAN (O14787) Transportin-2 (Karyopherin beta-2b)|
          Length = 897

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +1

Query: 229 WQPQEEGLREICAVLEAHISPNSDQARIWQ-QLQHYAQFPDFNNYLV 366
           WQP E+GL+++  +L+   SPN+   RI Q +L+   QFPDFNNYL+
Sbjct: 3   WQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLI 49



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>TNPO2_MOUSE (Q99LG2) Transportin-2 (Karyopherin beta-2b)|
          Length = 887

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +1

Query: 229 WQPQEEGLREICAVLEAHISPNSDQARIWQ-QLQHYAQFPDFNNYLV 366
           WQP E+GL+++  +L+   SPN+   RI Q +L+   QFPDFNNYL+
Sbjct: 3   WQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLI 49



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>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)|
          Length = 890

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +1

Query: 229 WQPQEEGLREICAVLEAHISPNSD-QARIWQQLQHYAQFPDFNNYLV 366
           W+P E+GL++I  +L+   SP++  Q  + Q+L+   Q+PDFNNYL+
Sbjct: 5   WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLI 51



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>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9|
           region interaction protein) (MIP)
          Length = 890

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +1

Query: 229 WQPQEEGLREICAVLEAHISPNSD-QARIWQQLQHYAQFPDFNNYLV 366
           W+P E+GL++I  +L+   SP++  Q  + Q+L+   Q+PDFNNYL+
Sbjct: 5   WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLI 51



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>IMB2_YEAST (P38217) Importin beta-2 subunit (Karyopherin beta-2 subunit)|
           (Importin 104) (Transportin) (TRN)
          Length = 918

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 229 WQPQEEGLREICAVLEAHISPNSD-QARIWQQLQHYAQFPDFNNYL 363
           W+P E+ + ++  +L+  +SPN + +    + ++++   P+F NYL
Sbjct: 5   WKPAEDYVLQLATLLQNCMSPNPEIRNNAMEAMENFQLQPEFLNYL 50



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>NAS2_HORVU (Q9ZQV7) Probable nicotianamine synthase 2 (EC 2.5.1.43)|
           (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-
           adenosyl-methionine 3-amino-3-carboxypropyltransferase
           2) (HvNAS2)
          Length = 335

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 232 QPQEEGLREICAVLEAHISPN-SDQARIWQQ-LQHYAQFPDFNNYL 363
           Q   EGL  +C+  E  +  + SD    + + L H   FP +NNY+
Sbjct: 62  QEMREGLIRLCSEAEGKLEAHYSDMLAAFDKPLDHLGMFPYYNNYI 107



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>TCPB_MOUSE (P80314) T-complex protein 1 subunit beta (TCP-1-beta) (CCT-beta)|
          Length = 534

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 229 WQPQEEGLREICAVLEAHISPNSDQARIWQQLQHYA 336
           W+   +  RE  A+L + +   SD+AR WQ L + A
Sbjct: 129 WREATKAARE--ALLSSAVDHGSDEARFWQDLMNIA 162



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>WOX9_ARATH (Q6X7J4) WUSCHEL-related homeobox 9|
          Length = 378

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 229 WQPQEEGLREICAVLEAHI--SPNSDQARIWQQLQHYAQFPDFN 354
           W P+ E +R + A+  + +   P  +  RI  QLQ Y Q  D N
Sbjct: 56  WNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDAN 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,665,885
Number of Sequences: 219361
Number of extensions: 148642
Number of successful extensions: 505
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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