ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl11e08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464248.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4183 Score = 48.1 bits (24), Expect = 0.020 Identities = 66/80 (82%) Strand = Plus / Plus Query: 177 gatgggtatggcgccattaatgagccagaatttagggctggtgaaccctacattggtagg 236 ||||||||||| | ||| |||| ||||| | |||||| |||| | |||||| ||||||| Sbjct: 610 gatgggtatggtgtcatcaatggcccagattatagggccggtggatcctacaatggtagg 669 Query: 237 agatatgtggatgaaggctt 256 || | ||||||||| ||||| Sbjct: 670 aggtttgtggatgatggctt 689 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 293 acatgatagaaatatgtatccacc 316 ||||||||||||| |||||||||| Sbjct: 732 acatgatagaaatgtgtatccacc 755
>dbj|AK069161.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008A08, full insert sequence Length = 4183 Score = 48.1 bits (24), Expect = 0.020 Identities = 66/80 (82%) Strand = Plus / Plus Query: 177 gatgggtatggcgccattaatgagccagaatttagggctggtgaaccctacattggtagg 236 ||||||||||| | ||| |||| ||||| | |||||| |||| | |||||| ||||||| Sbjct: 610 gatgggtatggtgtcatcaatggcccagattatagggccggtggatcctacaatggtagg 669 Query: 237 agatatgtggatgaaggctt 256 || | ||||||||| ||||| Sbjct: 670 aggtttgtggatgatggctt 689 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 293 acatgatagaaatatgtatccacc 316 ||||||||||||| |||||||||| Sbjct: 732 acatgatagaaatgtgtatccacc 755
>dbj|AK153631.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630026F13 product:hypothetical protein, full insert sequence Length = 3602 Score = 46.1 bits (23), Expect = 0.080 Identities = 26/27 (96%) Strand = Plus / Plus Query: 325 ctgctggcaccatgtggtctcagcctc 351 |||||||| |||||||||||||||||| Sbjct: 2039 ctgctggccccatgtggtctcagcctc 2065
>dbj|AK159041.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K530042E13 product:hypothetical protein, full insert sequence Length = 3628 Score = 46.1 bits (23), Expect = 0.080 Identities = 26/27 (96%) Strand = Plus / Plus Query: 325 ctgctggcaccatgtggtctcagcctc 351 |||||||| |||||||||||||||||| Sbjct: 2050 ctgctggccccatgtggtctcagcctc 2076
>dbj|AK040555.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430106G14 product:hypothetical protein, full insert sequence Length = 4069 Score = 46.1 bits (23), Expect = 0.080 Identities = 26/27 (96%) Strand = Plus / Plus Query: 325 ctgctggcaccatgtggtctcagcctc 351 |||||||| |||||||||||||||||| Sbjct: 2487 ctgctggccccatgtggtctcagcctc 2513
>dbj|AK079157.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430091K04 product:hypothetical protein, full insert sequence Length = 3533 Score = 46.1 bits (23), Expect = 0.080 Identities = 26/27 (96%) Strand = Plus / Plus Query: 325 ctgctggcaccatgtggtctcagcctc 351 |||||||| |||||||||||||||||| Sbjct: 1969 ctgctggccccatgtggtctcagcctc 1995
>dbj|AK086543.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930036F13 product:hypothetical protein, full insert sequence Length = 3625 Score = 46.1 bits (23), Expect = 0.080 Identities = 26/27 (96%) Strand = Plus / Plus Query: 325 ctgctggcaccatgtggtctcagcctc 351 |||||||| |||||||||||||||||| Sbjct: 2044 ctgctggccccatgtggtctcagcctc 2070
>ref|NM_177672.3| Mus musculus DNA segment, Chr 4, ERATO Doi 429, expressed (D4Ertd429e), transcript variant 2, mRNA Length = 3612 Score = 46.1 bits (23), Expect = 0.080 Identities = 26/27 (96%) Strand = Plus / Plus Query: 325 ctgctggcaccatgtggtctcagcctc 351 |||||||| |||||||||||||||||| Sbjct: 2030 ctgctggccccatgtggtctcagcctc 2056
>emb|AL626808.28| Mouse DNA sequence from clone RP23-383I7 on chromosome 4, complete sequence Length = 203992 Score = 46.1 bits (23), Expect = 0.080 Identities = 26/27 (96%) Strand = Plus / Minus Query: 325 ctgctggcaccatgtggtctcagcctc 351 |||||||| |||||||||||||||||| Sbjct: 35297 ctgctggccccatgtggtctcagcctc 35271
>gb|AC112514.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0023M11, complete sequence Length = 120228 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 ccccgccactcccgccgccggc 56 |||||||||||||||||||||| Sbjct: 106359 ccccgccactcccgccgccggc 106380
>ref|XM_534266.2| PREDICTED: Canis familiaris similar to DNA topoisomerase II binding protein 1 (DNA topoisomerase IIbeta-binding protein 1) (TopBP1) (LOC477070), mRNA Length = 5094 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 38 cgccactcccgccgccggcgccgcca 63 ||||||||||||||||| |||||||| Sbjct: 271 cgccactcccgccgccgtcgccgcca 296
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes Length = 37000 Score = 44.1 bits (22), Expect = 0.32 Identities = 28/30 (93%) Strand = Plus / Plus Query: 27 ggttccggccccgccactcccgccgccggc 56 |||||||||||||||| | ||||||||||| Sbjct: 8120 ggttccggccccgccattgccgccgccggc 8149 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 31 ccggccccgccactcccgccgccggcgccgccat 64 |||||||||||| | ||||||||||| ||||||| Sbjct: 8058 ccggccccgccattgccgccgccggccccgccat 8091 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 31 ccggccccgccactcccgccgccggcgccgccat 64 |||||||||||| | ||||||||||| ||||||| Sbjct: 8037 ccggccccgccattgccgccgccggccccgccat 8070 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 31 ccggccccgccactcccgccgccggcgccgccat 64 |||||||||||| | ||||||||||| ||||||| Sbjct: 7995 ccggccccgccattgccgccgccggccccgccat 8028 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 31 ccggccccgccactcccgccgccggcgccgccat 64 |||||||||||| | ||||||||||| ||||||| Sbjct: 7974 ccggccccgccattgccgccgccggccccgccat 8007
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 44.1 bits (22), Expect = 0.32 Identities = 28/30 (93%) Strand = Plus / Plus Query: 27 ggttccggccccgccactcccgccgccggc 56 |||||||||||||||| | ||||||||||| Sbjct: 38920 ggttccggccccgccattgccgccgccggc 38949 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 31 ccggccccgccactcccgccgccggcgccgccat 64 |||||||||||| | ||||||||||| ||||||| Sbjct: 38858 ccggccccgccattgccgccgccggccccgccat 38891 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 31 ccggccccgccactcccgccgccggcgccgccat 64 |||||||||||| | ||||||||||| ||||||| Sbjct: 38837 ccggccccgccattgccgccgccggccccgccat 38870 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 31 ccggccccgccactcccgccgccggcgccgccat 64 |||||||||||| | ||||||||||| ||||||| Sbjct: 38795 ccggccccgccattgccgccgccggccccgccat 38828 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 31 ccggccccgccactcccgccgccggcgccgccat 64 |||||||||||| | ||||||||||| ||||||| Sbjct: 38774 ccggccccgccattgccgccgccggccccgccat 38807
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 ccccgccactcccgccgccggc 56 |||||||||||||||||||||| Sbjct: 46131 ccccgccactcccgccgccggc 46152
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 ccccgccactcccgccgccggc 56 |||||||||||||||||||||| Sbjct: 10264806 ccccgccactcccgccgccggc 10264827 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 ctcccgccgccggcgccgccatccc 67 |||||||||||| |||||||||||| Sbjct: 21207412 ctcccgccgccgccgccgccatccc 21207436 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 gccggcgccgccatcccctcc 71 ||||||||||||||||||||| Sbjct: 13247902 gccggcgccgccatcccctcc 13247882 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 43 ctcccgccgccggcgccgccatcccctc 70 ||||||| |||||||||||||| ||||| Sbjct: 14923878 ctcccgctgccggcgccgccatgccctc 14923905
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 ccgccgccggcgccgccatcccctcc 71 ||||||||| |||||||||||||||| Sbjct: 12109581 ccgccgccgccgccgccatcccctcc 12109556
>dbj|AP005968.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1156C07 Length = 182153 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 ccgccgccggcgccgccatcccctcc 71 ||||||||| |||||||||||||||| Sbjct: 158444 ccgccgccgccgccgccatcccctcc 158419
>dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468A12 Length = 143018 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 ccgccgccggcgccgccatcccctcc 71 ||||||||| |||||||||||||||| Sbjct: 52370 ccgccgccgccgccgccatcccctcc 52345
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 32 cggccccgccactcccgccgccggcg 57 |||||||||||| ||||||||||||| Sbjct: 4275798 cggccccgccacccccgccgccggcg 4275823
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 ccccgccactcccgccgccggc 56 |||||||||||||||||||||| Sbjct: 10270845 ccccgccactcccgccgccggc 10270866 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 ctcccgccgccggcgccgccatccc 67 |||||||||||| |||||||||||| Sbjct: 21218676 ctcccgccgccgccgccgccatccc 21218700 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 gccggcgccgccatcccctcc 71 ||||||||||||||||||||| Sbjct: 13255242 gccggcgccgccatcccctcc 13255222 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 43 ctcccgccgccggcgccgccatcccctc 70 ||||||| |||||||||||||| ||||| Sbjct: 14932119 ctcccgctgccggcgccgccatgccctc 14932146
>ref|NM_197686.1| Oryza sativa (japonica cultivar-group) putative flavin-containing monooxygenase (OSJNBb0014I11.12), mRNA Length = 1512 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 43 ctcccgccgccggcgccgccatccc 67 |||||||||||| |||||||||||| Sbjct: 428 ctcccgccgccgccgccgccatccc 404
>ref|XM_864175.1| PREDICTED: Bos taurus similar to POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B), transcript variant 2 (LOC532453), mRNA Length = 1227 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 35 ccccgccactcccgccgccggcgcc 59 |||||||||||||||||||| |||| Sbjct: 184 ccccgccactcccgccgccgccgcc 160
>ref|XM_548372.2| PREDICTED: Canis familiaris similar to small nuclear RNA activating complex, polypeptide 4, 190kDa (LOC491251), mRNA Length = 5850 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 actcccgccgccggcgccgcc 62 ||||||||||||||||||||| Sbjct: 1289 actcccgccgccggcgccgcc 1269
>emb|AL590381.4| Human DNA sequence from clone RP11-373O10 on chromosome 9, complete sequence Length = 182430 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 29 ttccggccccgccactcccgccgcc 53 |||||| |||||||||||||||||| Sbjct: 153697 ttccgggcccgccactcccgccgcc 153673
>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0044A10, from chromosome 10, complete sequence Length = 173374 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 gccggcgccgccatcccctcc 71 ||||||||||||||||||||| Sbjct: 94151 gccggcgccgccatcccctcc 94131
>gb|AF478460.1| Cellulomonas fimi N-acetyl-beta-glucosaminidase (nag3A) gene, complete cds Length = 1695 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 cggcgccgccatcccctccca 73 ||||||||||||||||||||| Sbjct: 1368 cggcgccgccatcccctccca 1348
>emb|AJ496594.1|PST496594 Pseudomonas stutzeri partial rpoN operon, strain A15101 Length = 8072 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 aagtcgtcaccgtcctcttca 124 ||||||||||||||||||||| Sbjct: 4415 aagtcgtcaccgtcctcttca 4395
>emb|AJ237815.1|PAD237815 Porcine adenovirus serotype 3 complete genome, strain IAF Length = 34094 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 cccgccgccggcgccgccatc 65 ||||||||||||||||||||| Sbjct: 15386 cccgccgccggcgccgccatc 15406
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 ccgccgccggcgccgccatcc 66 ||||||||||||||||||||| Sbjct: 3718771 ccgccgccggcgccgccatcc 3718791 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 cccgccgccggcgccgccatc 65 ||||||||||||||||||||| Sbjct: 505048 cccgccgccggcgccgccatc 505068
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete sequence Length = 135510 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 43 ctcccgccgccggcgccgccatccc 67 |||||||||||| |||||||||||| Sbjct: 126947 ctcccgccgccgccgccgccatccc 126923
>gb|AC130527.4| Mus musculus BAC clone RP23-56C10 from chromosome 1, complete sequence Length = 233538 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 240 tatgtggatgaaggctttcct 260 ||||||||||||||||||||| Sbjct: 127718 tatgtggatgaaggctttcct 127698
>dbj|AK120878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027I19, full insert sequence Length = 1760 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 43 ctcccgccgccggcgccgccatccc 67 |||||||||||| |||||||||||| Sbjct: 593 ctcccgccgccgccgccgccatccc 569
>gb|AF083132.1|AF083132 Porcine adenovirus 3 strain 6618, complete genome Length = 34094 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 cccgccgccggcgccgccatc 65 ||||||||||||||||||||| Sbjct: 15387 cccgccgccggcgccgccatc 15407
>emb|AL691419.10| Mouse DNA sequence from clone RP23-95I4 on chromosome 3, complete sequence Length = 249405 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 atatacatgatagaaatatgt 309 ||||||||||||||||||||| Sbjct: 57487 atatacatgatagaaatatgt 57507
>dbj|AB026117.1| Porcine adenovirus 3 DNA, complete genome Length = 34094 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 cccgccgccggcgccgccatc 65 ||||||||||||||||||||| Sbjct: 15386 cccgccgccggcgccgccatc 15406
>dbj|AB029444.1| Leishmania mexicana amazonensis de novo pyrimidine biosynthesis gene cluster (pyr1, pyr3, Histone H3.1, Histone H3.2, pyr6-5, pyr2, pyr4 genes), complete cds Length = 26928 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ccgccatcccctcccaccccc 78 ||||||||||||||||||||| Sbjct: 11703 ccgccatcccctcccaccccc 11723
>ref|XM_464611.1| Oryza sativa (japonica cultivar-group), mRNA Length = 462 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 ccggccccgccactcccgccgccg 54 |||||||||||||| ||||||||| Sbjct: 416 ccggccccgccactgccgccgccg 439
>ref|NM_186386.1| Oryza sativa (japonica cultivar-group), mRNA Length = 549 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 actcccgccgccggcgccgccatc 65 ||||||||||||| |||||||||| Sbjct: 57 actcccgccgccgccgccgccatc 34
>gb|AC109201.12| Mus musculus chromosome 15, clone RP23-18P10, complete sequence Length = 213493 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ctcccgccgccggcgccgcc 62 |||||||||||||||||||| Sbjct: 86631 ctcccgccgccggcgccgcc 86650
>gb|AY024093.1| Oryza sativa microsatellite MRG6418 containing (GCTT)X6, closest to marker S12540, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 actcccgccgccggcgccgccatc 65 ||||||||||||| |||||||||| Sbjct: 195 actcccgccgccgccgccgccatc 172
>ref|XM_580906.2| PREDICTED: Bos taurus similar to Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 (LOC504742), mRNA Length = 785 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 31 ccggccccgccactcccgccgccggcgc 58 |||||||||||||| | ||||||||||| Sbjct: 579 ccggccccgccactgcagccgccggcgc 606
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccgccactcccgccgccggc 56 |||||||||||||||||||| Sbjct: 1930420 ccgccactcccgccgccggc 1930439
>ref|XM_414200.1| PREDICTED: Gallus gallus similar to chromosome 16 open reading frame 7; ATP synthase, subunit b-like (LOC415839), mRNA Length = 1239 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cccactgctggcaccatgtg 340 |||||||||||||||||||| Sbjct: 1219 cccactgctggcaccatgtg 1238
>ref|XM_869247.1| PREDICTED: Bos taurus similar to hairy and enhancer of split 5 (LOC617065), mRNA Length = 969 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 31 ccggccccgccactcccgccgccggcgccgcc 62 ||||||||||| ||||| |||||| ||||||| Sbjct: 953 ccggccccgcccctccctccgccgccgccgcc 922
>gb|AC183432.1| Ornithorhynchus anatinus BAC clone OABb-35B8 from chromosome unknown, complete sequence Length = 142253 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ctcccgccgccggcgccgcc 62 |||||||||||||||||||| Sbjct: 68864 ctcccgccgccggcgccgcc 68845
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 cactcccgccgccggcgccg 60 |||||||||||||||||||| Sbjct: 29935004 cactcccgccgccggcgccg 29934985
>ref|XM_916213.2| PREDICTED: Mus musculus RIKEN cDNA 2310047C04 gene, transcript variant 7 (2310047C04Rik), mRNA Length = 4459 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gccatcccctcccacccccg 79 |||||||||||||||||||| Sbjct: 90 gccatcccctcccacccccg 109
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 32 cggccccgccactcccgccgccggcgccgcca 63 ||||| |||||||| | ||||||||||||||| Sbjct: 286194 cggcctcgccactcgctccgccggcgccgcca 286225
>gb|AC122233.4| Mus musculus BAC clone RP23-137D14 from 16, complete sequence Length = 203964 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gccatcccctcccacccccg 79 |||||||||||||||||||| Sbjct: 203198 gccatcccctcccacccccg 203217
>emb|CR536601.8| Platypus DNA sequence from clone XX-307A9, complete sequence Length = 191674 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 31 ccggccccgccactcccgccgccggcgccgcc 62 ||||||||||||| ||||||||| ||||||| Sbjct: 100007 ccggccccgccaccgccgccgccgccgccgcc 100038
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete sequence Length = 159661 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cactcccgccgccggcgccg 60 |||||||||||||||||||| Sbjct: 75602 cactcccgccgccggcgccg 75621
>gb|AC109619.11| Mus musculus chromosome 19, clone RP23-427F6, complete sequence Length = 170072 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 cccactgctggcaccatgtg 340 |||||||||||||||||||| Sbjct: 92500 cccactgctggcaccatgtg 92481
>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20, complete sequence Length = 139421 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 43 ctcccgccgccggcgccgccatcccctc 70 ||||||| |||||||||||||| ||||| Sbjct: 103656 ctcccgctgccggcgccgccatgccctc 103683
>dbj|AK023503.1| Homo sapiens cDNA FLJ13441 fis, clone PLACE1002775, weakly similar to PEREGRIN Length = 2845 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cccgccgccggcgccgccat 64 |||||||||||||||||||| Sbjct: 128 cccgccgccggcgccgccat 147
>gb|DQ380588.1| Environmental sequence clone W1-3b arsenite oxidase Mo-pterin subunit (aoxB) gene, partial cds Length = 480 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cccgccgccggcgccgccat 64 |||||||||||||||||||| Sbjct: 417 cccgccgccggcgccgccat 398
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 48 gccgccggcgccgccatcccctcccacc 75 ||||||| ||||||||||||| |||||| Sbjct: 1392256 gccgccgacgccgccatccccgcccacc 1392229
>gb|BC113266.1| Bos taurus cDNA clone MGC:138041 IMAGE:8088446, complete cds Length = 1366 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 31 ccggccccgccactcccgccgccggcgc 58 |||||||||||||| | ||||||||||| Sbjct: 594 ccggccccgccactgcagccgccggcgc 621
>emb|BX000454.33| Mouse DNA sequence from clone RP24-276N4 on chromosome 4, complete sequence Length = 59316 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 ccggccccgccactcccgccgccg 54 ||||||||||||| |||||||||| Sbjct: 15651 ccggccccgccacccccgccgccg 15628
>dbj|AK009865.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310047C04 product:hypothetical protein, full insert sequence Length = 617 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gccatcccctcccacccccg 79 |||||||||||||||||||| Sbjct: 49 gccatcccctcccacccccg 68
>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete sequence Length = 139946 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 cactcccgccgccggcgccg 60 |||||||||||||||||||| Sbjct: 100945 cactcccgccgccggcgccg 100926
>dbj|AK039172.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230104G20 product:similar to KIAA0675 PROTEIN [Homo sapiens], full insert sequence Length = 2731 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gccatcccctcccacccccg 79 |||||||||||||||||||| Sbjct: 38 gccatcccctcccacccccg 57
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 cccgccgccggcgccgccatcccc 68 |||||||||| ||||||||||||| Sbjct: 24991685 cccgccgccgccgccgccatcccc 24991662
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 cgccgccggcgccgccatcccctc 70 |||||||| ||||||||||||||| Sbjct: 13928899 cgccgccgccgccgccatcccctc 13928922 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ctcccgccgccggcgccgcc 62 |||||||||||||||||||| Sbjct: 11188047 ctcccgccgccggcgccgcc 11188028
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 actcccgccgccggcgccgccatc 65 ||||||||||||| |||||||||| Sbjct: 3221044 actcccgccgccgccgccgccatc 3221021
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 cactcccgccgccggcgccg 60 |||||||||||||||||||| Sbjct: 30026426 cactcccgccgccggcgccg 30026407
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cactcccgccgccggcgccg 60 |||||||||||||||||||| Sbjct: 31518897 cactcccgccgccggcgccg 31518916 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 cactcccgccgccggcgccg 60 |||||||||||||||||||| Sbjct: 16617131 cactcccgccgccggcgccg 16617112 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 ccggccccgccactcccgccgccg 54 |||||||||||||| ||||||||| Sbjct: 6322957 ccggccccgccactgccgccgccg 6322934 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 acatgatagaaatatgtatccacc 316 ||||||||||||| |||||||||| Sbjct: 3629828 acatgatagaaatgtgtatccacc 3629805 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 tcccgccgccggcgccgcca 63 |||||||||||||||||||| Sbjct: 1847693 tcccgccgccggcgccgcca 1847712
>gb|AY211916.1| Homo sapiens sarcoma antigen NY-SAR-29 mRNA, partial cds Length = 855 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cccgccgccggcgccgccat 64 |||||||||||||||||||| Sbjct: 117 cccgccgccggcgccgccat 136
>gb|AC154447.2| Mus musculus BAC clone RP23-185B14 from chromosome 16, complete sequence Length = 212505 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gccatcccctcccacccccg 79 |||||||||||||||||||| Sbjct: 79575 gccatcccctcccacccccg 79594
>gb|AC122719.2| Homo sapiens chromosome 5 clone RP11-661C8, complete sequence Length = 164798 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cccgccgccggcgccgccat 64 |||||||||||||||||||| Sbjct: 75980 cccgccgccggcgccgccat 75961
>gb|AC007448.14| Homo sapiens chromosome 17, clone RP11-401F2, complete sequence Length = 195558 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ctcccgccgccggcgccgcc 62 |||||||||||||||||||| Sbjct: 88209 ctcccgccgccggcgccgcc 88190
>dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1267_F10 Length = 162669 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 ccggccccgccactcccgccgccg 54 |||||||||||||| ||||||||| Sbjct: 120344 ccggccccgccactgccgccgccg 120321
>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455F03 Length = 158201 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 actcccgccgccggcgccgccatc 65 ||||||||||||| |||||||||| Sbjct: 136034 actcccgccgccgccgccgccatc 136011
>dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0042H24 Length = 186313 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ctcccgccgccggcgccgcc 62 |||||||||||||||||||| Sbjct: 23219 ctcccgccgccggcgccgcc 23200
>dbj|AP005685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0004P20 Length = 160410 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ctcccgccgccggcgccgcc 62 |||||||||||||||||||| Sbjct: 146854 ctcccgccgccggcgccgcc 146835
>dbj|AP005421.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0435D08 Length = 148912 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 cgccgccggcgccgccatcccctc 70 |||||||| ||||||||||||||| Sbjct: 82576 cgccgccgccgccgccatcccctc 82599
>dbj|AP005321.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0650H04 Length = 134533 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 cgccgccggcgccgccatcccctc 70 |||||||| ||||||||||||||| Sbjct: 31373 cgccgccgccgccgccatcccctc 31396
>dbj|AP005804.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0085K21 Length = 180714 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 acatgatagaaatatgtatccacc 316 ||||||||||||| |||||||||| Sbjct: 111118 acatgatagaaatgtgtatccacc 111095
>dbj|AP004884.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519B12 Length = 147542 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 cactcccgccgccggcgccg 60 |||||||||||||||||||| Sbjct: 59098 cactcccgccgccggcgccg 59079
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11 Length = 155168 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cactcccgccgccggcgccg 60 |||||||||||||||||||| Sbjct: 154294 cactcccgccgccggcgccg 154313
>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0431B06 Length = 154796 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cactcccgccgccggcgccg 60 |||||||||||||||||||| Sbjct: 9457 cactcccgccgccggcgccg 9476
>dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0585B01 Length = 133231 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 tcccgccgccggcgccgcca 63 |||||||||||||||||||| Sbjct: 84337 tcccgccgccggcgccgcca 84356
>dbj|AK105358.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-C09, full insert sequence Length = 499 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 actcccgccgccggcgccgccatc 65 ||||||||||||| |||||||||| Sbjct: 16 actcccgccgccgccgccgccatc 39
>dbj|AK101239.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031N08, full insert sequence Length = 924 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 cccgccgccggcgccgccatcccc 68 |||||||||| ||||||||||||| Sbjct: 113 cccgccgccgccgccgccatcccc 90
>dbj|AK065335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H01, full insert sequence Length = 1724 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ctcccgccgccggcgccgcc 62 |||||||||||||||||||| Sbjct: 56 ctcccgccgccggcgccgcc 75
>dbj|AK059858.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-B03, full insert sequence Length = 1407 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 cgccgccggcgccgccatcccctc 70 |||||||| ||||||||||||||| Sbjct: 838 cgccgccgccgccgccatcccctc 815
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 actcccgccgccggcgccgccatc 65 ||||||||||||| |||||||||| Sbjct: 30737 actcccgccgccgccgccgccatc 30714
>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome Length = 1884661 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 caccgtcctcttcatctccc 130 |||||||||||||||||||| Sbjct: 355178 caccgtcctcttcatctccc 355159
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 actcccgccgccggcgccgccatc 65 ||||||||||||| |||||||||| Sbjct: 75879 actcccgccgccgccgccgccatc 75856
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 cccgccgccggcgccgccatcccc 68 |||||||||| ||||||||||||| Sbjct: 24919891 cccgccgccgccgccgccatcccc 24919868
>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146686 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 cccgccgccggcgccgccatcccc 68 |||||||||| ||||||||||||| Sbjct: 115482 cccgccgccgccgccgccatcccc 115505
>gb|AC122240.4| Mus musculus BAC clone RP23-145L9 from 6, complete sequence Length = 211740 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 gccgccatcccctcccaccc 76 |||||||||||||||||||| Sbjct: 122557 gccgccatcccctcccaccc 122538
>ref|NM_023924.2| Homo sapiens bromodomain containing 9 (BRD9), transcript variant 1, mRNA Length = 2845 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cccgccgccggcgccgccat 64 |||||||||||||||||||| Sbjct: 128 cccgccgccggcgccgccat 147
>emb|AL845488.7| Mouse DNA sequence from clone RP23-215P8 on chromosome 2, complete sequence Length = 153445 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ttaatgagccagaatttagg 212 |||||||||||||||||||| Sbjct: 59635 ttaatgagccagaatttagg 59654
>emb|AL645947.9| Mouse DNA sequence from clone RP23-338K8 on chromosome 11, complete sequence Length = 235868 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ctcccgccgccggcgccgcc 62 |||||||||||||||||||| Sbjct: 22006 ctcccgccgccggcgccgcc 21987
>emb|AL663027.9| Mouse DNA sequence from clone RP23-16P3 on chromosome 2, complete sequence Length = 219778 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 ccaccaccacccactgctgg 331 |||||||||||||||||||| Sbjct: 106426 ccaccaccacccactgctgg 106445
>emb|AL732593.7| Mouse DNA sequence from clone RP23-231L24 on chromosome 4, complete sequence Length = 227155 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 actcatctcctcccctcttc 103 |||||||||||||||||||| Sbjct: 71810 actcatctcctcccctcttc 71829 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,829,475 Number of Sequences: 3902068 Number of extensions: 3829475 Number of successful extensions: 89800 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88231 Number of HSP's gapped (non-prelim): 1569 length of query: 372 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 350 effective length of database: 17,147,199,772 effective search space: 6001519920200 effective search space used: 6001519920200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
