ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 38 1.2
2gb|AC134429.3| Mus musculus BAC clone RP24-344D20 from chromosom... 36 4.6
3gb|AC079331.11| Homo sapiens chromosome 17, clone RP11-360N9, co... 36 4.6
4gb|AC132087.4| Mus musculus BAC clone RP24-407J14 from 9, comple... 36 4.6
5gb|AC006534.10| Homo sapiens chromosome 17, clone RP11-557B23, c... 36 4.6

>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                              
Query: 6       ctcatcccgtcattgctcctcatgatgtgag 36
               |||||| |||||||||||||  |||||||||
Sbjct: 1550280 ctcatcgcgtcattgctccttgtgatgtgag 1550310



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>gb|AC134429.3| Mus musculus BAC clone RP24-344D20 from chromosome 9, complete sequence
          Length = 180602

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 21     ctcctcatgatgtgagct 38
              ||||||||||||||||||
Sbjct: 150773 ctcctcatgatgtgagct 150756



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>gb|AC079331.11| Homo sapiens chromosome 17, clone RP11-360N9, complete sequence
          Length = 182535

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 19    tgctcctcatgatgtgagcttg 40
             ||||| ||||||||||||||||
Sbjct: 58247 tgctcttcatgatgtgagcttg 58226



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>gb|AC132087.4| Mus musculus BAC clone RP24-407J14 from 9, complete sequence
          Length = 169174

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 21    ctcctcatgatgtgagct 38
             ||||||||||||||||||
Sbjct: 12068 ctcctcatgatgtgagct 12051



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>gb|AC006534.10| Homo sapiens chromosome 17, clone RP11-557B23, complete sequence
          Length = 216789

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 19    tgctcctcatgatgtgagcttg 40
             ||||| ||||||||||||||||
Sbjct: 22755 tgctcttcatgatgtgagcttg 22776


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 181,670
Number of Sequences: 3902068
Number of extensions: 181670
Number of successful extensions: 45027
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45010
Number of HSP's gapped (non-prelim): 17
length of query: 41
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 21
effective length of database: 17,155,003,908
effective search space: 360255082068
effective search space used: 360255082068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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