ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137113.4| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
4gb|AE005677.1| Caulobacter crescentus CB15 section 3 of 359 of t... 42 1.3
5gb|AC135644.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
6dbj|AK066559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
7gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
8ref|XM_744172.1| Aspergillus fumigatus Af293 polyketide synthase... 40 5.0
9ref|XM_502193.1| Yarrowia lipolytica CLIB122, YALI0C23727g predi... 40 5.0
10emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete g... 40 5.0
11dbj|AK094011.1| Homo sapiens cDNA FLJ36692 fis, clone UTERU20088... 40 5.0
12gb|AC104305.2| Homo sapiens chromosome 3 clone RP11-523D22, comp... 40 5.0
13gb|AC137935.2| Homo sapiens chromosome 3 clone RP11-626A1, compl... 40 5.0
14emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 5.0 
>gb|AC137113.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0006N14, complete sequence
          Length = 155730

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 176   gactgcatcgaccgcttcatgcaccg 201
             ||||||||||||||||||||||||||
Sbjct: 68923 gactgcatcgaccgcttcatgcaccg 68898
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 176      gactgcatcgaccgcttcatgcaccg 201
                ||||||||||||||||||||||||||
Sbjct: 15213290 gactgcatcgaccgcttcatgcaccg 15213265



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 161      gcgcacgccattgaagactgcatcgaccgcttcatgcaccg 201
                ||||||| ||| || |||||| ||||||||||| |||||||
Sbjct: 26917473 gcgcacgacatcgaggactgcgtcgaccgcttcttgcaccg 26917513



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 39       acatcaatttcatcaagtat 58
                ||||||||||||||||||||
Sbjct: 23076068 acatcaatttcatcaagtat 23076087
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 176      gactgcatcgaccgcttcatgcaccg 201
                ||||||||||||||||||||||||||
Sbjct: 15294789 gactgcatcgaccgcttcatgcaccg 15294764



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 161      gcgcacgccattgaagactgcatcgaccgcttcatgcaccg 201
                ||||||| ||| || |||||| ||||||||||| |||||||
Sbjct: 27244526 gcgcacgacatcgaggactgcgtcgaccgcttcttgcaccg 27244566



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 39       acatcaatttcatcaagtat 58
                ||||||||||||||||||||
Sbjct: 23385978 acatcaatttcatcaagtat 23385997
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>gb|AE005677.1| Caulobacter crescentus CB15 section 3 of 359 of the complete genome
          Length = 14299

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 251   cgggtgaagacggtgaaggcc 271
             |||||||||||||||||||||
Sbjct: 13217 cgggtgaagacggtgaaggcc 13237
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>gb|AC135644.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0085H07, complete sequence
          Length = 133291

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 161   gcgcacgccattgaagactgcatcgaccgcttcatgcaccg 201
             ||||||| ||| || |||||| ||||||||||| |||||||
Sbjct: 28433 gcgcacgacatcgaggactgcgtcgaccgcttcttgcaccg 28393
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>dbj|AK066559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074H11, full
           insert sequence
          Length = 3799

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 161 gcgcacgccattgaagactgcatcgaccgcttcatgcaccg 201
           ||||||| ||| || |||||| ||||||||||| |||||||
Sbjct: 302 gcgcacgacatcgaggactgcgtcgaccgcttcttgcaccg 342
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>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0042J05, complete sequence
          Length = 150295

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    acatcaatttcatcaagtat 58
             ||||||||||||||||||||
Sbjct: 92071 acatcaatttcatcaagtat 92090
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>ref|XM_744172.1| Aspergillus fumigatus Af293 polyketide synthase (Afu2g01290) partial
            mRNA
          Length = 7689

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 313  atcaaaggatgcgtccaagc 332
            ||||||||||||||||||||
Sbjct: 6793 atcaaaggatgcgtccaagc 6812
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>ref|XM_502193.1| Yarrowia lipolytica CLIB122, YALI0C23727g predicted mRNA
          Length = 1224

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 293 atccaggagctcaagaagat 312
           ||||||||||||||||||||
Sbjct: 328 atccaggagctcaagaagat 347
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>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 296     caggagctcaagaagatatc 315
               ||||||||||||||||||||
Sbjct: 1502360 caggagctcaagaagatatc 1502379
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>dbj|AK094011.1| Homo sapiens cDNA FLJ36692 fis, clone UTERU2008845, highly similar to
            Homo sapiens mRNA for RIE2 sid2705
          Length = 3041

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 289  ggctatccaggagctcaaga 308
            ||||||||||||||||||||
Sbjct: 1494 ggctatccaggagctcaaga 1513
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>gb|AC104305.2| Homo sapiens chromosome 3 clone RP11-523D22, complete sequence
          Length = 149858

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 294    tccaggagctcaagaagata 313
              ||||||||||||||||||||
Sbjct: 138286 tccaggagctcaagaagata 138305
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>gb|AC137935.2| Homo sapiens chromosome 3 clone RP11-626A1, complete sequence
          Length = 175912

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 294  tccaggagctcaagaagata 313
            ||||||||||||||||||||
Sbjct: 8597 tccaggagctcaagaagata 8616
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 293     atccaggagctcaagaagat 312
               ||||||||||||||||||||
Sbjct: 3183021 atccaggagctcaagaagat 3183040


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,614,356
Number of Sequences: 3902068
Number of extensions: 2614356
Number of successful extensions: 55534
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55420
Number of HSP's gapped (non-prelim): 114
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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