ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLDD1_ARATH (Q9C5Y0) Phospholipase D delta (EC 3.1.4.4) (AtPLDde... 30 0.008
2PLDG3_ARATH (Q9T052) Phospholipase D gamma 3 (EC 3.1.4.4) (AtPLD... 28 4.2
3PLDG1_ARATH (Q9T053) Phospholipase D gamma 1 (EC 3.1.4.4) (AtPLD... 28 7.2

>PLDD1_ARATH (Q9C5Y0) Phospholipase D delta (EC 3.1.4.4) (AtPLDdelta) (PLD|
           delta)
          Length = 868

 Score = 30.4 bits (67), Expect(2) = 0.008
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 305 HMDMFSEHIRRCFASC 352
           +MDMFSEH+RR F +C
Sbjct: 28  NMDMFSEHLRRLFTAC 43



 Score = 26.2 bits (56), Expect(2) = 0.008
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 252 VLLHGDLDLWVLEARLL 302
           +LLHGDLDL +++AR L
Sbjct: 10  MLLHGDLDLKIVKARRL 26



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>PLDG3_ARATH (Q9T052) Phospholipase D gamma 3 (EC 3.1.4.4) (AtPLDgamma3) (PLD|
           gamma 3)
          Length = 866

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 225 DESPSPPKPVLLHGDLDLWVLEARLL 302
           D S    +  LLHG+LD+WV EA+ L
Sbjct: 33  DTSSGSLRVELLHGNLDIWVKEAKHL 58



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>PLDG1_ARATH (Q9T053) Phospholipase D gamma 1 (EC 3.1.4.4) (AtPLDgamma1) (PLD|
           gamma 1) (Choline phosphatase) (Lipophosphodiesterase
           II) (Lecithinase D)
          Length = 858

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 255 LLHGDLDLWVLEARLL 302
           LLHG+LD+WV EA+ L
Sbjct: 39  LLHGNLDIWVKEAKHL 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,559,991
Number of Sequences: 219361
Number of extensions: 153791
Number of successful extensions: 597
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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