ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_186392.1| Oryza sativa (japonica cultivar-group), mRNA 76 8e-11
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 76 8e-11
3dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 76 8e-11
4dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 76 8e-11
5gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.2
6gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.2
7gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 42 1.2
8emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.2
9emb|BX294188.11| Zebrafish DNA sequence from clone DKEY-255G14, ... 42 1.2
10gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 42 1.2
11gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 4.6
12emb|BX640404.2| Chicken DNA sequence from clone WAG-36O23, compl... 40 4.6
13gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete se... 40 4.6
14dbj|AP003796.2| Gallus gallus genomic DNA, chromosome 5, clone:2... 40 4.6
15ref|NM_013135.1| Rattus norvegicus RAS p21 protein activator 1 (... 40 4.6
16emb|AL805912.5| Mouse DNA sequence from clone RP23-425K3 on chro... 40 4.6
17gb|L13151.1|RATGAPX Rat GTPase-activating protein (GAP) gene, co... 40 4.6 
>ref|NM_186392.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2856

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                     
Query: 261 ctccacagcttcctccacccagatctcgtgctgcgcctcgaccgcggggagtgccgcg 318
           |||||||||||||||||||| ||||||||||| |||||||| |||||||  |||||||
Sbjct: 214 ctccacagcttcctccacccggatctcgtgcttcgcctcgagcgcgggggttgccgcg 271



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                
Query: 139 ccgccgtctgcctcgtccctttcaggtggtgggcgggggtgcgcgaggaggcg 191
           ||||||||||||||||||| ||||||||||||||| ||||| | |||||||||
Sbjct: 89  ccgccgtctgcctcgtccccttcaggtggtgggcgagggtgagggaggaggcg 141
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                         
Query: 261     ctccacagcttcctccacccagatctcgtgctgcgcctcgaccgcggggagtgccgcg 318
               |||||||||||||||||||| ||||||||||| |||||||| |||||||  |||||||
Sbjct: 3239572 ctccacagcttcctccacccggatctcgtgcttcgcctcgagcgcgggggttgccgcg 3239629



 Score = 46.1 bits (23), Expect = 0.075
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 139     ccgccgtctgcctcgtccctttcaggt 165
               ||||||||||||||||||| |||||||
Sbjct: 3239362 ccgccgtctgcctcgtccccttcaggt 3239388
to top
>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                        
Query: 261    ctccacagcttcctccacccagatctcgtgctgcgcctcgaccgcggggagtgccgcg 318
              |||||||||||||||||||| ||||||||||| |||||||| |||||||  |||||||
Sbjct: 154562 ctccacagcttcctccacccggatctcgtgcttcgcctcgagcgcgggggttgccgcg 154619



 Score = 46.1 bits (23), Expect = 0.075
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 139    ccgccgtctgcctcgtccctttcaggt 165
              ||||||||||||||||||| |||||||
Sbjct: 154352 ccgccgtctgcctcgtccccttcaggt 154378
to top
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                       
Query: 261   ctccacagcttcctccacccagatctcgtgctgcgcctcgaccgcggggagtgccgcg 318
             |||||||||||||||||||| ||||||||||| |||||||| |||||||  |||||||
Sbjct: 49265 ctccacagcttcctccacccggatctcgtgcttcgcctcgagcgcgggggttgccgcg 49322



 Score = 46.1 bits (23), Expect = 0.075
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 139   ccgccgtctgcctcgtccctttcaggt 165
             ||||||||||||||||||| |||||||
Sbjct: 49055 ccgccgtctgcctcgtccccttcaggt 49081
to top
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 289    tgctgcgcctcgaccgcggggagtgccgc 317
              ||||||||||||| ||||||||| |||||
Sbjct: 816560 tgctgcgcctcgagcgcggggagggccgc 816588
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 289     tgctgcgcctcgaccgcggggagtgccgc 317
               ||||||||||||| ||||||||| |||||
Sbjct: 1703279 tgctgcgcctcgagcgcggggagggccgc 1703307
to top
>gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough plasmid pDV,
              complete sequence
          Length = 202301

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 131    ctgccccgccgccgtctgcct 151
              |||||||||||||||||||||
Sbjct: 161465 ctgccccgccgccgtctgcct 161445
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 289     tgctgcgcctcgaccgcggggagtgccgc 317
               ||||||||||||| ||||||||| |||||
Sbjct: 1589992 tgctgcgcctcgagcgcggggagggccgc 1590020
to top
>emb|BX294188.11| Zebrafish DNA sequence from clone DKEY-255G14, complete sequence
          Length = 261943

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 254    caggcttctccacagcttcctccac 278
              ||||||||||||||| |||||||||
Sbjct: 119847 caggcttctccacagattcctccac 119871
to top
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 215     cgcagccacgccggcggcctc 235
               |||||||||||||||||||||
Sbjct: 2453061 cgcagccacgccggcggcctc 2453081
to top
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 286     tcgtgctgcgcctcgaccgc 305
               ||||||||||||||||||||
Sbjct: 2182181 tcgtgctgcgcctcgaccgc 2182200
to top
>emb|BX640404.2| Chicken DNA sequence from clone WAG-36O23, complete sequence
          Length = 136520

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 271   tcctccacccagatctcgtgctgc 294
             ||||||||||||||||| ||||||
Sbjct: 48366 tcctccacccagatctcctgctgc 48343
to top
>gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete sequence
          Length = 36153

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 163  ggtggtgggcgggggtgcgc 182
            ||||||||||||||||||||
Sbjct: 6070 ggtggtgggcgggggtgcgc 6089
to top
>dbj|AP003796.2| Gallus gallus genomic DNA, chromosome 5, clone:26D12, complete sequence
          Length = 156014

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 271   tcctccacccagatctcgtgctgc 294
             ||||||||||||||||| ||||||
Sbjct: 42316 tcctccacccagatctcctgctgc 42339
to top
>ref|NM_013135.1| Rattus norvegicus RAS p21 protein activator 1 (Rasa1), mRNA
          Length = 3117

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 183 gaggaggcggcagaggaggg 202
           ||||||||||||||||||||
Sbjct: 394 gaggaggcggcagaggaggg 375
to top
>emb|AL805912.5| Mouse DNA sequence from clone RP23-425K3 on chromosome 4, complete
             sequence
          Length = 151967

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   acagcttcctccacccagat 284
             ||||||||||||||||||||
Sbjct: 56582 acagcttcctccacccagat 56563
to top
>gb|L13151.1|RATGAPX Rat GTPase-activating protein (GAP) gene, complete cds
          Length = 3296

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 183 gaggaggcggcagaggaggg 202
           ||||||||||||||||||||
Sbjct: 491 gaggaggcggcagaggaggg 472


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,962,492
Number of Sequences: 3902068
Number of extensions: 1962492
Number of successful extensions: 44952
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44711
Number of HSP's gapped (non-prelim): 241
length of query: 349
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 327
effective length of database: 17,147,199,772
effective search space: 5607134325444
effective search space used: 5607134325444
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top