>SOX1_MOUSE (P53783) SOX-1 protein|
          Length = 391

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 216 GRHPAXXXXXKEVEEGTTHPHHPSAPPRTP 305
           G+HP              HPHHP A P  P
Sbjct: 214 GQHPGAGGRHPHAHPAHPHPHHPHAHPHNP 243

>SOX1_HUMAN (O00570) SOX-1 protein|
          Length = 387

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 216 GRHPAXXXXXKEVEEGTTHPHHPSAPPRTP 305
           G+HP              HPHHP A P  P
Sbjct: 214 GQHPGAGGAHPHRTPAHPHPHHPHAHPHNP 243

>SECY_STRSC (P43416) Preprotein translocase secY subunit|
          Length = 437

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -2

Query: 350 GGHLSTARAGCSLHQGCSGRCRRMVWVGSTLLHLLAAAPASRVASRGNHDCRAWGSVS 177
           GG +   RAG    +  S    R+ W GS  L L+A  P   +A  G +    +G  S
Sbjct: 351 GGFIPGIRAGRPTAEYLSYVLNRITWPGSLYLGLIALVPTMALAPLGANQNFPFGGTS 408

>SECY_STRLI (P49977) Preprotein translocase secY subunit|
          Length = 437

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -2

Query: 350 GGHLSTARAGCSLHQGCSGRCRRMVWVGSTLLHLLAAAPASRVASRGNHDCRAWGSVS 177
           GG +   RAG    +  S    R+ W GS  L L+A  P   +A  G +    +G  S
Sbjct: 351 GGFIPGIRAGRPTAEYLSYVLNRITWPGSLYLGLIALVPTMALAGFGANQNFPFGGTS 408

>SECY_STRCO (P46785) Preprotein translocase secY subunit|
          Length = 437

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -2

Query: 350 GGHLSTARAGCSLHQGCSGRCRRMVWVGSTLLHLLAAAPASRVASRGNHDCRAWGSVS 177
           GG +   RAG    +  S    R+ W GS  L L+A  P   +A  G +    +G  S
Sbjct: 351 GGFIPGIRAGRPTAEYLSYVLNRITWPGSLYLGLIALVPTMALAGFGANQNFPFGGTS 408

>CF015_HUMAN (Q6UXA7) Protein C6orf15 precursor (STG protein)|
          Length = 325

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 268 PTHTIRRHLPEHPWWRLQPALAVDRCPPYYAW 363
           P   I R LP+HPW  L P+++     P   W
Sbjct: 196 PWSLIHRVLPDHPWGTLNPSVSWGGGGPGTGW 227

>WNT1_HUMAN (P04628) Proto-oncogene protein Wnt-1 precursor|
          Length = 370

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 275 WVGSTLLHLLAAAPASRVASRGNHDCRAWGSVS 177
           WV +TLL  LAA PA+  A   N   R WG V+
Sbjct: 10  WVSATLLLALAALPAALAA---NSSGRWWGIVN 39

>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7|
          Length = 1303

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 152 PPGNTDPNHSPSPMPCNHDSR 214
           PP +  P  +PSP PC+ D+R
Sbjct: 17  PPPSPPPPSTPSPPPCSPDAR 37

>CF015_MACMU (Q9BGL9) Protein C6orf15 homolog precursor (rmSTG)|
          Length = 314

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 268 PTHTIRRHLPEHPWWRLQPALAVDRCPPYYAW 363
           P   I R LP+HPW  L P+++     P   W
Sbjct: 196 PWSLIYRVLPDHPWGTLNPSVSWGGGGPGTGW 227

>SECY_STRGR (Q59916) Preprotein translocase secY subunit|
          Length = 437

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -2

Query: 350 GGHLSTARAGCSLHQGCSGRCRRMVWVGSTLLHLLAAAPASRVASRG 210
           GG +   RAG    +  S    R+ W GS  L L+A  P   +A  G
Sbjct: 350 GGFIPGIRAGRPTAEYLSYVLNRITWPGSLYLGLIALVPTMALAGFG 396

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 186  APCPAIMIPAGRHPAXXXXXKEVEEGTTHPHHPSAP 293
            +P PA  +P  R P        V +GT  PH PS P
Sbjct: 1509 SPAPASDMP--RSPGAPTPSPMVAQGTQTPHRPSTP 1542

>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)|
          Length = 283

 Score = 23.5 bits (49), Expect(2) = 9.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 152 PPGNTDPNHSPSPMP 196
           PP    P H+PSP P
Sbjct: 174 PPVTKPPTHTPSPKP 188



 Score = 22.3 bits (46), Expect(2) = 9.2
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +3

Query: 189 PCPAIMIPAGRHPAXXXXXKEVEEGTTHPHHPSAPPRTP 305
           P P    P  + PA        +  T+ P HP   P TP
Sbjct: 207 PSPPTYTPTPKPPAT-------KPPTSTPTHPKPTPHTP 238


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,965,924
Number of Sequences: 219361
Number of extensions: 941665
Number of successful extensions: 3367
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3365
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)