ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.020
2gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 48 0.020
3emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb... 48 0.020
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.020
5emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa... 48 0.020
6ref|NM_183869.1| Oryza sativa (japonica cultivar-group), predic... 42 1.2
7gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
8gb|AY496708.1| Pandanus amaryllifolius fructose-bisphosphate ald... 42 1.2
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
11ref|NM_204104.1| Gallus gallus retina and anterior neural fold h... 42 1.2
12dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
13dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
14dbj|AK100992.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
15dbj|AK069936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
16gb|AF420600.1| Gallus gallus homeobox transcription factor RAX1 ... 42 1.2
17dbj|AB020318.1| Gallus gallus mRNA for homeobox protein cRax/Rax... 42 1.2
18gb|DQ215052.1| Taeniopygia guttata clone 0058P0020B08 H2A histon... 40 4.8
19gb|DQ215051.1| Taeniopygia guttata clone 0061P0027A01 H2A histon... 40 4.8
20gb|DQ215050.1| Taeniopygia guttata clone 0058P0007H05 H2A histon... 40 4.8
21gb|DQ215048.1| Taeniopygia guttata clone 0058P0013F02 H2A histon... 40 4.8
22gb|DQ215047.1| Taeniopygia guttata clone 0058P0026B08 H2A histon... 40 4.8
23gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 4.8
24gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
25gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
26ref|XM_364388.1| Magnaporthe grisea 70-15 predicted protein (MG0... 40 4.8
27gb|AC141880.3| Mus musculus BAC clone RP24-220N1 from chromosome... 40 4.8
28gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.8
29gb|AC125540.4| Mus musculus BAC clone RP23-229O18 from chromosom... 40 4.8
30gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 4.8
31gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 4.8
32dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 4.8
33dbj|AK172262.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 4.8
34gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 4.8
35dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
36dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
37dbj|AP003706.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
38dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
39dbj|AK059409.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.8
40emb|AL132855.4|CNS01DTR Human chromosome 14 DNA sequence BAC C-2... 40 4.8
41gb|AE015924.1| Porphyromonas gingivalis W83, complete genome 40 4.8
42gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 4.8
43gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
44gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete... 40 4.8
45gb|M12856.1|CHKUGU2 Chicken U2 small nuclear RNA gene 40 4.8 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 319      gcgccgtggcggcgccggaggtga 342
                ||||||||||||||||||||||||
Sbjct: 20866871 gcgccgtggcggcgccggaggtga 20866848
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 312    ggcggcggcgccgtggcggcgccg 335
              ||||||||||||||||||||||||
Sbjct: 285426 ggcggcggcgccgtggcggcgccg 285449
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>emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 101075

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 319   gcgccgtggcggcgccggaggtga 342
             ||||||||||||||||||||||||
Sbjct: 68598 gcgccgtggcggcgccggaggtga 68575
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 319      gcgccgtggcggcgccggaggtga 342
                ||||||||||||||||||||||||
Sbjct: 20793085 gcgccgtggcggcgccggaggtga 20793062
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>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 107819

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 319   gcgccgtggcggcgccggaggtga 342
             ||||||||||||||||||||||||
Sbjct: 92124 gcgccgtggcggcgccggaggtga 92147
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>ref|NM_183869.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1155

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 318 ggcgccgtggcggcgccggag 338
           |||||||||||||||||||||
Sbjct: 401 ggcgccgtggcggcgccggag 381
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>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02,
             complete sequence
          Length = 131860

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 312   ggcggcggcgccgtggcggcg 332
             |||||||||||||||||||||
Sbjct: 75015 ggcggcggcgccgtggcggcg 74995
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>gb|AY496708.1| Pandanus amaryllifolius fructose-bisphosphate aldolase (FBA) mRNA,
           complete cds
          Length = 1077

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 329 ggcgccggaggtgatagcgga 349
           |||||||||||||||||||||
Sbjct: 714 ggcgccggaggtgatagcgga 734
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 312      ggcggcggcgccgtggcggcg 332
                |||||||||||||||||||||
Sbjct: 22373380 ggcggcggcgccgtggcggcg 22373360



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 91      cggcggcggcggccccatggctgc 114
               ||||||||||||| ||||||||||
Sbjct: 6486776 cggcggcggcggcgccatggctgc 6486799
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 318      ggcgccgtggcggcgccggag 338
                |||||||||||||||||||||
Sbjct: 12791463 ggcgccgtggcggcgccggag 12791443



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 88       ccacggcggcggcggcccca 107
                ||||||||||||||||||||
Sbjct: 27534420 ccacggcggcggcggcccca 27534439
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>ref|NM_204104.1| Gallus gallus retina and anterior neural fold homeobox (RAX), mRNA
          Length = 1230

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 92  ggcggcggcggccccatggct 112
           |||||||||||||||||||||
Sbjct: 993 ggcggcggcggccccatggct 973
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>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0489E06
          Length = 140229

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 318   ggcgccgtggcggcgccggag 338
             |||||||||||||||||||||
Sbjct: 71862 ggcgccgtggcggcgccggag 71842
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>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0554D10
          Length = 158723

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 318    ggcgccgtggcggcgccggag 338
              |||||||||||||||||||||
Sbjct: 158492 ggcgccgtggcggcgccggag 158472
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>dbj|AK100992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146F09, full
           insert sequence
          Length = 1581

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 318 ggcgccgtggcggcgccggag 338
           |||||||||||||||||||||
Sbjct: 554 ggcgccgtggcggcgccggag 534
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>dbj|AK069936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039G20, full
           insert sequence
          Length = 2880

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 312 ggcggcggcgccgtggcggcg 332
           |||||||||||||||||||||
Sbjct: 209 ggcggcggcgccgtggcggcg 189
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>gb|AF420600.1| Gallus gallus homeobox transcription factor RAX1 (RAX1) mRNA,
           complete cds
          Length = 1230

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 92  ggcggcggcggccccatggct 112
           |||||||||||||||||||||
Sbjct: 993 ggcggcggcggccccatggct 973
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>dbj|AB020318.1| Gallus gallus mRNA for homeobox protein cRax/Rax2/Rx2, complete cds
          Length = 1195

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 92  ggcggcggcggccccatggct 112
           |||||||||||||||||||||
Sbjct: 826 ggcggcggcggccccatggct 806
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>gb|DQ215052.1| Taeniopygia guttata clone 0058P0020B08 H2A histone family member V
           variant 1-like mRNA, complete sequence
          Length = 704

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 90  acggcggcggcggccccatggctg 113
           |||||||||||||| |||||||||
Sbjct: 31  acggcggcggcggcaccatggctg 54
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>gb|DQ215051.1| Taeniopygia guttata clone 0061P0027A01 H2A histone family member V
           variant 1-like mRNA, complete sequence
          Length = 707

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 90  acggcggcggcggccccatggctg 113
           |||||||||||||| |||||||||
Sbjct: 34  acggcggcggcggcaccatggctg 57
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>gb|DQ215050.1| Taeniopygia guttata clone 0058P0007H05 H2A histone family member V
           variant 1-like mRNA, complete sequence
          Length = 701

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 90  acggcggcggcggccccatggctg 113
           |||||||||||||| |||||||||
Sbjct: 28  acggcggcggcggcaccatggctg 51
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>gb|DQ215048.1| Taeniopygia guttata clone 0058P0013F02 H2A histone family member V
           variant 1-like mRNA, complete sequence
          Length = 685

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 90  acggcggcggcggccccatggctg 113
           |||||||||||||| |||||||||
Sbjct: 11  acggcggcggcggcaccatggctg 34
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>gb|DQ215047.1| Taeniopygia guttata clone 0058P0026B08 H2A histone family member V
           variant 1-like mRNA, complete sequence
          Length = 729

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 90  acggcggcggcggccccatggctg 113
           |||||||||||||| |||||||||
Sbjct: 56  acggcggcggcggcaccatggctg 79
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>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940117D9, complete sequence
          Length = 143368

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 316    gcggcgccgtggcggcgccg 335
              ||||||||||||||||||||
Sbjct: 119764 gcggcgccgtggcggcgccg 119783
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>gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0115F21, complete sequence
          Length = 128493

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 91    cggcggcggcggccccatggctgc 114
             ||||||||||||| ||||||||||
Sbjct: 49464 cggcggcggcggcgccatggctgc 49487
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>gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0084F23, complete sequence
          Length = 89829

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   ggcggcggcgccgtggcggc 331
             ||||||||||||||||||||
Sbjct: 20992 ggcggcggcgccgtggcggc 21011
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>ref|XM_364388.1| Magnaporthe grisea 70-15 predicted protein (MG09233.4) partial mRNA
          Length = 1641

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cggcggcggcggccccatgg 110
            ||||||||||||||||||||
Sbjct: 1449 cggcggcggcggccccatgg 1468
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>gb|AC141880.3| Mus musculus BAC clone RP24-220N1 from chromosome 15, complete sequence
          Length = 185646

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     gcggcggccccatggctgct 115
              ||||||||||||||||||||
Sbjct: 158189 gcggcggccccatggctgct 158208
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 317     cggcgccgtggcggcgccgg 336
               ||||||||||||||||||||
Sbjct: 7648582 cggcgccgtggcggcgccgg 7648563
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>gb|AC125540.4| Mus musculus BAC clone RP23-229O18 from chromosome 15, complete sequence
          Length = 162455

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     gcggcggccccatggctgct 115
              ||||||||||||||||||||
Sbjct: 154499 gcggcggccccatggctgct 154480
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   gcgggcggcggcgccgtggc 328
             ||||||||||||||||||||
Sbjct: 41483 gcgggcggcggcgccgtggc 41502
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>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0096L14, from chromosome 3, complete sequence
          Length = 131142

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   cggcgccgtggcggcgccgg 336
             ||||||||||||||||||||
Sbjct: 66708 cggcgccgtggcggcgccgg 66727
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 87      accacggcggcggcggcccc 106
               ||||||||||||||||||||
Sbjct: 3148730 accacggcggcggcggcccc 3148749
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>dbj|AK172262.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830111E09 product:unclassifiable, full
            insert sequence
          Length = 1610

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   gcggcggccccatggctgct 115
            ||||||||||||||||||||
Sbjct: 1553 gcggcggccccatggctgct 1534
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 313     gcggcggcgccgtggcggcg 332
               ||||||||||||||||||||
Sbjct: 2095705 gcggcggcgccgtggcggcg 2095686
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 312     ggcggcggcgccgtggcggc 331
               ||||||||||||||||||||
Sbjct: 7537108 ggcggcggcgccgtggcggc 7537089
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 317     cggcgccgtggcggcgccgg 336
               ||||||||||||||||||||
Sbjct: 7646417 cggcgccgtggcggcgccgg 7646398
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>dbj|AP003706.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1125_C04
          Length = 98476

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    ccacggcggcggcggcccca 107
             ||||||||||||||||||||
Sbjct: 55123 ccacggcggcggcggcccca 55142
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>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0007F06
          Length = 150817

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 88   ccacggcggcggcggcccca 107
            ||||||||||||||||||||
Sbjct: 1714 ccacggcggcggcggcccca 1733
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>dbj|AK059409.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C05, full
           insert sequence
          Length = 1026

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 cggcgccgtggcggcgccgg 336
           ||||||||||||||||||||
Sbjct: 147 cggcgccgtggcggcgccgg 166
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>emb|AL132855.4|CNS01DTR Human chromosome 14 DNA sequence BAC C-2201G16 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 157910

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      ctccccaccctgtcgccctc 25
              ||||||||||||||||||||
Sbjct: 117507 ctccccaccctgtcgccctc 117526
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>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   gtgcctgcgatggaagagcc 304
             ||||||||||||||||||||
Sbjct: 41556 gtgcctgcgatggaagagcc 41575
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 309     gcgggcggcggcgccgtggc 328
               ||||||||||||||||||||
Sbjct: 1144692 gcgggcggcggcgccgtggc 1144711
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 312     ggcggcggcgccgtggcggc 331
               ||||||||||||||||||||
Sbjct: 7607194 ggcggcggcgccgtggcggc 7607175
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>gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete sequence
          Length = 53591

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 309   gcgggcggcggcgccgtggcggcg 332
             |||||||||| |||||||||||||
Sbjct: 46289 gcgggcggcgccgccgtggcggcg 46266
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>gb|M12856.1|CHKUGU2 Chicken U2 small nuclear RNA gene
          Length = 840

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 309 gcgggcggcggcgccgtggcggcg 332
           ||||| ||||||||||||||||||
Sbjct: 246 gcggggggcggcgccgtggcggcg 269


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,046,152
Number of Sequences: 3902068
Number of extensions: 3046152
Number of successful extensions: 88636
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86601
Number of HSP's gapped (non-prelim): 2035
length of query: 362
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 340
effective length of database: 17,147,199,772
effective search space: 5830047922480
effective search space used: 5830047922480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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