ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl11c11 |
|---|---|
| Clone Library Name | barley_pub |
>RFA1_HUMAN (P27694) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (Single-stranded DNA-binding protein) (p70) Length = 616 Score = 38.5 bits (88), Expect = 0.008 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 6/87 (6%) Frame = +3 Query: 144 NTIQK-RRIVIVVKLEVLQSECA---KIGTPKVYEKSL--PEGQEPSLPANAAQTNSGSY 305 NT++ RR+VI+++LEVL+S A KIG P Y + L P+ P+ A+ A ++ Sbjct: 85 NTLKDGRRVVILMELEVLKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQP 144 Query: 306 SGGPGMLGSTVAPKVEQIGNNLSYGRA 386 G +GSTV+ + G + ++G+A Sbjct: 145 QNGSSGMGSTVS---KAYGASKTFGKA 168
>DLGP4_RAT (P97839) Disks large-associated protein 4 (DAP-4)| (SAP90/PSD-95-associated protein 4) (SAPAP4) (PSD-95/SAP90-binding protein 4) Length = 992 Score = 37.4 bits (85), Expect = 0.017 Identities = 24/63 (38%), Positives = 31/63 (49%) Frame = +3 Query: 249 EGQEPSLPANAAQTNSGSYSGGPGMLGSTVAPKVEQIGNNLSYGRANNRGPGVDSSICQP 428 + E SLP + NS S GP APK+ QI NLSYG +N P +++S P Sbjct: 727 KSSERSLPDCTSHPNSISIDAGPRQ-----APKIAQIKRNLSYG--DNSDPALEASSLPP 779 Query: 429 VQP 437 P Sbjct: 780 PDP 782
>DLGP4_HUMAN (Q9Y2H0) Disks large-associated protein 4 (DAP-4)| (SAP90/PSD-95-associated protein 4) (SAPAP4) (PSD-95/SAP90-binding protein 4) Length = 989 Score = 36.6 bits (83), Expect = 0.030 Identities = 24/63 (38%), Positives = 30/63 (47%) Frame = +3 Query: 249 EGQEPSLPANAAQTNSGSYSGGPGMLGSTVAPKVEQIGNNLSYGRANNRGPGVDSSICQP 428 + E SLP NS S GP APK+ QI NLSYG +N P +++S P Sbjct: 724 KSSERSLPDCTPHPNSISIDAGPRQ-----APKIAQIKRNLSYG--DNSDPALEASSLPP 776 Query: 429 VQP 437 P Sbjct: 777 PDP 779
>RFA1_PONPY (Q5R7Q4) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (p70) Length = 616 Score = 36.2 bits (82), Expect = 0.039 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%) Frame = +3 Query: 144 NTIQK-RRIVIVVKLEVLQSE---CAKIGTPKVYEKSL--PEGQEPSLPANAAQTNSGSY 305 NT++ RR+VI+++LEVL+S KIG P Y + L P+ P+ A+ A ++ Sbjct: 85 NTLKDGRRVVILMELEVLKSAEVVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQP 144 Query: 306 SGGPGMLGSTVAPKVEQIGNNLSYGRA 386 G GSTV+ + G + ++G+A Sbjct: 145 QNGTSGAGSTVS---KAYGASKTFGKA 168
>PRR37_ORYSA (Q689G8) Two-component response regulator-like PRR37| (Pseudo-response regulator 37) (OsPRR37) Length = 742 Score = 34.3 bits (77), Expect = 0.15 Identities = 22/69 (31%), Positives = 33/69 (47%) Frame = +3 Query: 198 SECAKIGTPKVYEKSLPEGQEPSLPANAAQTNSGSYSGGPGMLGSTVAPKVEQIGNNLSY 377 S + G+ V++ + EG + N + NSGS +G G GST A E+ ++ Sbjct: 593 SGAPQCGSSNVFDPPV-EGHAANYGVNGS--NSGSNNGSNGQNGSTTAVNAERPNMEIAN 649 Query: 378 GRANNRGPG 404 G N GPG Sbjct: 650 GTINKSGPG 658
>RFA1_XENTR (Q5FW17) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (p70) Length = 609 Score = 32.7 bits (73), Expect = 0.43 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Frame = +3 Query: 159 RRIVIVVKLEVLQSE---CAKIGTPKVYEKSLPEGQEPSLPANAAQTNSGSYSGGPGMLG 329 RR++IV+++EVL+S KIG P Y +GQ P PA A ++ S P + Sbjct: 91 RRVIIVMEMEVLKSADLVKGKIGNPHPYN----DGQGPPQPAAPAPASAPPPS-KPQNIS 145 Query: 330 STVAPKVEQIGNNLSYGRANNRGPGVDSSICQPV 431 + P + + + L G + PG S P+ Sbjct: 146 APPPPSMNRGASKLFGGGSVVNTPGGSQSKVVPI 179
>MRAY_XANOR (Q5GW39) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 361 Score = 32.0 bits (71), Expect = 0.73 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 386 GSTI*QVVTNLLHLWGNCRPQHAWATRIASTVCLSSIGW 270 GS I VT + LWG+ R ++ W +A +C +IGW Sbjct: 76 GSLILLTVTLSVLLWGDLRNRYVWLV-LAVMICFGAIGW 113
>MRAY_XANOM (Q2NZB6) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 361 Score = 32.0 bits (71), Expect = 0.73 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 386 GSTI*QVVTNLLHLWGNCRPQHAWATRIASTVCLSSIGW 270 GS I VT + LWG+ R ++ W +A +C +IGW Sbjct: 76 GSLILLTVTLSVLLWGDLRNRYVWLV-LAVMICFGAIGW 113
>MRAY_XANCP (Q8PCK2) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 361 Score = 32.0 bits (71), Expect = 0.73 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 386 GSTI*QVVTNLLHLWGNCRPQHAWATRIASTVCLSSIGW 270 GS I VT + LWG+ R ++ W +A +C +IGW Sbjct: 76 GSLILLTVTLSVLLWGDLRNRYVWLV-LAVMICFGAIGW 113
>MRAY_XANC8 (Q4UQW8) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 361 Score = 32.0 bits (71), Expect = 0.73 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 386 GSTI*QVVTNLLHLWGNCRPQHAWATRIASTVCLSSIGW 270 GS I VT + LWG+ R ++ W +A +C +IGW Sbjct: 76 GSLILLTVTLSVLLWGDLRNRYVWLV-LAVMICFGAIGW 113
>MRAY_XANC5 (Q3BXF4) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 361 Score = 32.0 bits (71), Expect = 0.73 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 386 GSTI*QVVTNLLHLWGNCRPQHAWATRIASTVCLSSIGW 270 GS I VT + LWG+ R ++ W +A +C +IGW Sbjct: 76 GSLILLTVTLSVLLWGDLRNRYVWLV-LAVMICFGAIGW 113
>MRAY_XANAC (Q8PPB0) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 361 Score = 32.0 bits (71), Expect = 0.73 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 386 GSTI*QVVTNLLHLWGNCRPQHAWATRIASTVCLSSIGW 270 GS I VT + LWG+ R ++ W +A +C +IGW Sbjct: 76 GSLILLTVTLSVLLWGDLRNRYVWLV-LAVMICFGAIGW 113
>MAML3_HUMAN (Q96JK9) Mastermind-like protein 3 (Mam-3)| Length = 1133 Score = 31.6 bits (70), Expect = 0.95 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%) Frame = +3 Query: 66 QRQNPPPNSKPPLRVGSIVHLTDMTCNTIQKRRIVIVVKLEVLQSECAKIGTPKVYEKSL 245 Q+Q PPP + P HL++ ++R++++ + V+ A P ++ Sbjct: 644 QQQPPPPQLQAPR-----AHLSE------DQKRLLLMKQKGVMNQPMAYAALPSHGQEQH 692 Query: 246 PEG-------QEPSLPANAAQTNSGSYSGGPGMLGS 332 P G + S+P + SG+ GPG LGS Sbjct: 693 PVGLPRTTGPMQSSVPPGSGGMVSGASPAGPGFLGS 728
>SUZ12_DROME (Q9NJG9) Polycomb protein Su(z)12 (Suppressor 12 of zeste protein)| Length = 900 Score = 30.8 bits (68), Expect = 1.6 Identities = 24/71 (33%), Positives = 36/71 (50%) Frame = +3 Query: 237 KSLPEGQEPSLPANAAQTNSGSYSGGPGMLGSTVAPKVEQIGNNLSYGRANNRGPGVDSS 416 K+L Q+P+ PA+ A T+S S SG S PK ++ +L G A + PGV S Sbjct: 683 KTLKSPQKPAPPADQASTSSASTSGSGSGSSSMQPPK--RMPAHLKRGSAAS-SPGVQSK 739 Query: 417 ICQPVQPGANN 449 + G+N+ Sbjct: 740 GTENGTNGSNS 750
>MEF2D_HUMAN (Q14814) Myocyte-specific enhancer factor 2D| Length = 521 Score = 30.4 bits (67), Expect = 2.1 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 7/92 (7%) Frame = +3 Query: 63 HQRQNPPPNSKPPLRV-------GSIVHLTDMTCNTIQKRRIVIVVKLEVLQSECAKIGT 221 H Q P+ KP LRV G + HLT+ + +R+ + L + + T Sbjct: 257 HSTQLGAPSRKPDLRVITSQAGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVAT 316 Query: 222 PKVYEKSLPEGQEPSLPANAAQTNSGSYSGGP 317 P + + LP P+ Q S S P Sbjct: 317 PSLLSQGLPFSSMPTAYNTDYQLTSAELSSLP 348
>YADC_SCHPO (Q09837) Putative glycosyl transferase C4G8.12c in chromosome I (EC| 2.-.-.-) Length = 533 Score = 30.4 bits (67), Expect = 2.1 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 6/38 (15%) Frame = -3 Query: 276 WLVS*APVPQVSFSH------KPLVSRFWRTHFEELQV 181 W+++ Q++ SH K ++S+FW T++EE++V Sbjct: 408 WMLARPKFSQINTSHLYNYSTKQMISKFWETYYEEVKV 445
>MINC_XYLFA (Q9PDQ7) Probable septum site-determining protein minC| Length = 238 Score = 30.4 bits (67), Expect = 2.1 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%) Frame = +3 Query: 60 HHQRQN---PPPNSKPPLRVGSIVHLT 131 H++RQ PPP S PP+ G I H T Sbjct: 112 HYERQEVAAPPPQSTPPINTGRIQHTT 138
>RFA1_BRARE (Q6NY74) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (p70) Length = 601 Score = 30.0 bits (66), Expect = 2.8 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Frame = +3 Query: 159 RRIVIVVKLEVLQSE---CAKIGTPKVYEKSLPEGQEPSLPANAAQTNSGSYSGGPGMLG 329 RR+V+++ +EVL+S KIG P Y EGQ + P+ A + G G Sbjct: 90 RRVVVILDIEVLKSADQMPGKIGDPTPY----VEGQSKA-PSTAPAPTARPLQPQNGSDG 144 Query: 330 STVAPKVEQIG 362 ST P + G Sbjct: 145 STYRPSAQSFG 155
>MINC_XYLFT (Q87DW2) Probable septum site-determining protein minC| Length = 238 Score = 30.0 bits (66), Expect = 2.8 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%) Frame = +3 Query: 60 HHQRQN---PPPNSKPPLRVGSIVHLT 131 H++RQ PPP S PP+ G I H T Sbjct: 112 HYERQEVAAPPPQSTPPISTGRIQHTT 138
>RNP4_PYRFU (Q8U0H6) Ribonuclease P protein component 4 (EC 3.1.26.5) (RNase P| component 4) Length = 117 Score = 29.6 bits (65), Expect = 3.6 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +1 Query: 247 LRDRSLAYQPMLLKQTVEAILVAQACWGLQLPQRWS-RLVTTCH 375 L +R Y P L K+ VE L+ Q +++P++W R CH Sbjct: 24 LAERVFPYSPELAKRYVELALLVQQKAKVKIPRKWKRRYCKKCH 67
>Y208_METJA (Q57661) Hypothetical protein MJ0208| Length = 246 Score = 29.3 bits (64), Expect = 4.7 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 3/105 (2%) Frame = +3 Query: 126 LTDMTCNTIQKRRIVIVVKLEVLQSECAKIGTPKVYEKSLPEGQEPSLPANAAQTNSGSY 305 + D+ T+ R VVK+ L E I YE+ + E + P + + G Y Sbjct: 36 IEDLKVTTLVSRAGEEVVKMYGLFGELYNISNGNYYEELILEREHPYSSPITGRLSLGKY 95 Query: 306 S---GGPGMLGSTVAPKVEQIGNNLSYGRANNRGPGVDSSICQPV 431 P G+TVA V I ++L G G S+ PV Sbjct: 96 DYLICSPA-TGNTVAKVVNGIADSLVTNAIAQAGKGFVKSLIVPV 139
>GON4L_RAT (Q535K8) GON-4-like protein (Protein GON4) (GON-4 homolog)| Length = 2256 Score = 28.9 bits (63), Expect = 6.2 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Frame = +1 Query: 211 KSGHQRFMRKAYLRDRSLAYQPMLLKQTVEAILV----AQACWGLQLPQRWSRLVTTC-H 375 K G +RF RKA+ + R L +P+L++ + V A W Q S V H Sbjct: 990 KPGSKRFSRKAWRQKRPLVQKPLLIQPSPSVQPVFNPGKMATWPTQSEVPPSNTVVQIPH 1049 Query: 376 MVEPTTGAQAL 408 +++P Q L Sbjct: 1050 LIQPAAVLQTL 1060
>GON4L_MOUSE (Q9DB00) GON-4-like protein (GON-4 homolog)| Length = 2260 Score = 28.9 bits (63), Expect = 6.2 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Frame = +1 Query: 211 KSGHQRFMRKAYLRDRSLAYQPMLLKQTVEAILV----AQACWGLQLPQRWSRLVTTC-H 375 K G +RF RKA+ + R L +P+L++ + V A W Q S V H Sbjct: 991 KPGSKRFSRKAWRQKRPLVQKPLLIQPSPSVQPVFNPGKMATWPTQSEVPPSNTVVQIPH 1050 Query: 376 MVEPTTGAQAL 408 +++P Q L Sbjct: 1051 LIQPAAVLQTL 1061
>MEF2D_MOUSE (Q63943) Myocyte-specific enhancer factor 2D| Length = 514 Score = 28.5 bits (62), Expect = 8.1 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 7/92 (7%) Frame = +3 Query: 63 HQRQNPPPNSKPPLRV-------GSIVHLTDMTCNTIQKRRIVIVVKLEVLQSECAKIGT 221 H Q P+ KP LRV G + HLT + +R+ + L + + T Sbjct: 257 HNTQLGAPSRKPDLRVITSQGGKGLMHHLTGDHLDLNNAQRLGVSQSTHSLTTPVVSVAT 316 Query: 222 PKVYEKSLPEGQEPSLPANAAQTNSGSYSGGP 317 P + + LP P+ Q S S P Sbjct: 317 PSLLSQGLPFSSMPTAYNTDYQLPSAELSSLP 348
>PRAX_MOUSE (O55103) Periaxin| Length = 1391 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +3 Query: 120 VHLTDMTCNTIQKRRIVIVVKLEVLQSECAKIGTPKVYEKSLPEGQEPSLPANA 281 VHL D+ + + ++ V ++ V + PKV E LPE + P +P A Sbjct: 521 VHLPDVQLPKVPEMKLPKVPEMAVPDVHLPDVQLPKVPEMKLPEMKLPKVPEMA 574
>KIC1_YEAST (P38692) Serine/threonine-protein kinase KIC1 (EC 2.7.11.1) (Kinase| that interacts with CDC31) (N-rich kinase 1) Length = 1080 Score = 28.5 bits (62), Expect = 8.1 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +3 Query: 228 VYEKSLPEGQEPSLPANAAQTNSGSYSGGP-GMLGSTVAPKVEQIGNNLSYGRANNRGP 401 + EK + G + + + + S S P +LGS+V+ V IGNN + G NN GP Sbjct: 887 ISEKHIDFGGKIKRSQSISNRKNSSASEHPLNILGSSVSGNVSGIGNN-NVGSNNNSGP 944
>ZIPA_ERWCT (Q6D8S6) Cell division protein zipA homolog| Length = 332 Score = 28.5 bits (62), Expect = 8.1 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 9/83 (10%) Frame = +3 Query: 228 VYEKSLPEGQEPSLPANAAQT--------NSGSYSGGPGMLGSTVAPKVEQIGNNLSYGR 383 ++EK P Q+P+ PA A +T + G GG +L S + + N+ + Sbjct: 176 LHEKVQPAPQQPAEPAAAKETVLVLHVVAHQGGVIGGELLLQSLLQAGFQFGEMNIFHRH 235 Query: 384 ANNRGPG-VDSSICQPVQPGANN 449 N G G V S+ V+PG+ N Sbjct: 236 VNPAGAGPVLFSLANMVKPGSFN 258 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,909,808 Number of Sequences: 219361 Number of extensions: 1253862 Number of successful extensions: 4015 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3821 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4011 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
