>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04,
             complete sequence
          Length = 176678

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 282   gctcaaacaaacagtggaagctattctggtggcccaggcatgctggg 328
             |||||||| || | ||||| ||||||||||||| || ||||||||||
Sbjct: 81236 gctcaaaccaataatggaacctattctggtggcgcaagcatgctggg 81282

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                             
Query: 282    gctcaaacaaacagtggaagctattctggtggcccaggcatgctggg 328
              |||||||| || | ||||| ||||||||||||| || ||||||||||
Sbjct: 563837 gctcaaaccaataatggaacctattctggtggcgcaagcatgctggg 563883

>dbj|AK073598.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033047G19, full
           insert sequence
          Length = 3170

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 282 gctcaaacaaacagtggaagctattctggtggcccaggcatgctggg 328
           |||||||| || | ||||| ||||||||||||| || ||||||||||
Sbjct: 524 gctcaaaccaataatggaacctattctggtggcgcaagcatgctggg 570

>gb|AY614708.1| Baboon Polyomavirus 1 strain SA12, complete genome
          Length = 5230

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 230  ttatgagaaaagcttacctgag 251
            ||||||||||||||||||||||
Sbjct: 5038 ttatgagaaaagcttacctgag 5017

>gb|DQ435829.1| Simian virus 12, complete genome
          Length = 5206

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 230  ttatgagaaaagcttacctgag 251
            ||||||||||||||||||||||
Sbjct: 5121 ttatgagaaaagcttacctgag 5100

>gb|M10656.1|PVB12ORI Baboon papovavirus simian agent 12 (SA12) origin of replication
          Length = 822

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 230 ttatgagaaaagcttacctgag 251
           ||||||||||||||||||||||
Sbjct: 418 ttatgagaaaagcttacctgag 439

>gb|AC161280.2| Pan troglodytes BAC clone CH251-392H4 from chromosome 7, complete
              sequence
          Length = 190939

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    acttgaagttcttcaaagtg 201
              ||||||||||||||||||||
Sbjct: 118066 acttgaagttcttcaaagtg 118047

>gb|AC161123.3| Pan troglodytes BAC clone CH251-618D5 from chromosome 7, complete
              sequence
          Length = 190856

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    acttgaagttcttcaaagtg 201
              ||||||||||||||||||||
Sbjct: 182988 acttgaagttcttcaaagtg 182969

>gb|AC146817.10| Medicago truncatula clone mth2-8c19, complete sequence
          Length = 114343

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   ttattgttgtcaaacttgaa 188
             ||||||||||||||||||||
Sbjct: 33872 ttattgttgtcaaacttgaa 33891

>gb|AC013644.7| Homo sapiens chromosome 8, clone RP11-17A4, complete sequence
          Length = 168477

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   cccaggcatgctggggtcta 333
             ||||||||||||||||||||
Sbjct: 68530 cccaggcatgctggggtcta 68511

>gb|AC171014.3| Gallus gallus BAC clone CH261-89A18 from chromosome ul, complete sequence
          Length = 181265

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    tgctcaaacaaacagtggaa 300
              ||||||||||||||||||||
Sbjct: 138550 tgctcaaacaaacagtggaa 138531

>emb|AL845323.18| Mouse DNA sequence from clone RP23-304D11 on chromosome 2, complete
             sequence
          Length = 228137

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   tacctgagggacaggagcct 263
             ||||||||||||||||||||
Sbjct: 65624 tacctgagggacaggagcct 65605

>gb|AC003991.1|AC003991 Human BAC clone CTB-167B5 from 7q21, complete sequence
          Length = 118313

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   acttgaagttcttcaaagtg 201
             ||||||||||||||||||||
Sbjct: 29208 acttgaagttcttcaaagtg 29189

>emb|AJ330019.1|HSA330019 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-VM13R
          Length = 842

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 387 aacaacaggggcccaggcgt 406
           ||||||||||||||||||||
Sbjct: 569 aacaacaggggcccaggcgt 588

>emb|AL589652.13| Mouse DNA sequence from clone RP23-369L6 on chromosome X, complete
              sequence
          Length = 199294

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 290    aaacagtggaagctattctg 309
              ||||||||||||||||||||
Sbjct: 114103 aaacagtggaagctattctg 114122


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,982,566
Number of Sequences: 3902068
Number of extensions: 2982566
Number of successful extensions: 60068
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60029
Number of HSP's gapped (non-prelim): 39
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)