ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa826... 88 2e-14
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
3dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
4dbj|AK064696.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
5emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 44 0.26
6gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.0
7emb|CR376737.4| Zebrafish DNA sequence from clone CH211-14G13 in... 42 1.0
8gb|AC073548.5| Homo sapiens chromosome 19 clone RP11-43N16, comp... 42 1.0
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
10dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.0
11dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
12dbj|AK105944.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.0
13dbj|AK070880.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.0
14gb|AC158537.2| Mus musculus BAC clone RP23-2H7 from chromosome 1... 40 4.1
15ref|XM_468544.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.1
16ref|XM_479145.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.1
17ref|XM_507389.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 4.1
18ref|XM_506459.2| PREDICTED Oryza sativa (japonica cultivar-group... 40 4.1
19gb|BT017810.1| Zea mays clone EL01N0507A04.c mRNA sequence 40 4.1
20gb|AY725781.1| Oncometopia nigricans putative rhodopsin mRNA, co... 40 4.1
21emb|AL136221.38| Human DNA sequence from clone RP11-391H12 on ch... 40 4.1
22gb|DQ442996.1| Triticum aestivum phosphomannomutase mRNA, comple... 40 4.1
23gb|AC124591.4| Mus musculus BAC clone RP23-136G17 from chromosom... 40 4.1
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
25dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
27gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.1
28dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
29dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
30dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
31dbj|AK106898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.1
32dbj|AK106522.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.1
33dbj|AK101449.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.1
34dbj|AK099895.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.1
35dbj|AK067398.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.1
36dbj|AP003700.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
37gb|AY103805.1| Zea mays PCO119314 mRNA sequence 40 4.1
38gb|BC093401.1| Rattus norvegicus cathepsin W, mRNA (cDNA clone M... 40 4.1
39gb|AC162945.5| Mus musculus BAC clone RP23-60O19 from chromosome... 40 4.1
40ref|NM_001024242.1| Rattus norvegicus cathepsin W (Ctsw), mRNA 40 4.1
41gb|AC114897.43| Mus musculus strain C57BL/6J clone rp23-158e11 m... 40 4.1 
>ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa8264 predicted mRNA
          Length = 2952

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                               
Query: 256 ccgggcttcgcgctcgcgctcctcggcctcgcctcctccccgcgccacgacc 307
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ccggggttcgggctcgcgctcctcggcctcgcctcctccccgcgccacgacc 169



 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 139 atggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctcc 198
           ||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | ||||||
Sbjct: 1   atggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctcc 60

             
Query: 199 cc 200
           ||
Sbjct: 61  cc 62
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                   
Query: 256     ccgggcttcgcgctcgcgctcctcggcctcgcctcctccccgcgccacgacc 307
               ||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 7481571 ccggggttcgggctcgcgctcctcggcctcgcctcctccccgcgccacgacc 7481520



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                           
Query: 138     aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 197
               |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 7481689 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 7481630

                  
Query: 198     ccc 200
               |||
Sbjct: 7481629 ccc 7481627



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 259      ggcttcgcgctcgcgctcctc 279
                |||||||||||||||||||||
Sbjct: 36857343 ggcttcgcgctcgcgctcctc 36857323
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>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0708G02
          Length = 168976

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                 
Query: 256   ccgggcttcgcgctcgcgctcctcggcctcgcctcctccccgcgccacgacc 307
             ||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 30363 ccggggttcgggctcgcgctcctcggcctcgcctcctccccgcgccacgacc 30312



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                         
Query: 138   aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 197
             |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 30481 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 30422

                
Query: 198   ccc 200
             |||
Sbjct: 30421 ccc 30419
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>dbj|AK064696.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F11, full
           insert sequence
          Length = 1754

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                               
Query: 256 ccgggcttcgcgctcgcgctcctcggcctcgcctcctccccgcgccacgacc 307
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ccggggttcgggctcgcgctcctcggcctcgcctcctccccgcgccacgacc 295



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                       
Query: 138 aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 197
           |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 126 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 185

              
Query: 198 ccc 200
           |||
Sbjct: 186 ccc 188
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 260    gcttcgcgctcgcgctcctcgg 281
              ||||||||||||||||||||||
Sbjct: 776818 gcttcgcgctcgcgctcctcgg 776839
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>gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012G21,
              complete sequence
          Length = 135750

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 259    ggcttcgcgctcgcgctcctc 279
              |||||||||||||||||||||
Sbjct: 115153 ggcttcgcgctcgcgctcctc 115173
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>emb|CR376737.4| Zebrafish DNA sequence from clone CH211-14G13 in linkage group 24,
             complete sequence
          Length = 158366

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 8     ctctctccccgtccgacccccttcc 32
             ||||| |||||||||||||||||||
Sbjct: 76238 ctctcaccccgtccgacccccttcc 76214
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>gb|AC073548.5| Homo sapiens chromosome 19 clone RP11-43N16, complete sequence
          Length = 167722

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 276   cctcggcctcgcctcctcccc 296
             |||||||||||||||||||||
Sbjct: 64347 cctcggcctcgcctcctcccc 64327
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 259      ggcttcgcgctcgcgctcctc 279
                |||||||||||||||||||||
Sbjct: 21862744 ggcttcgcgctcgcgctcctc 21862764
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 263     tcgcgctcgcgctcctcggcc 283
               |||||||||||||||||||||
Sbjct: 5082488 tcgcgctcgcgctcctcggcc 5082508
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>dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1096A10
          Length = 150976

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 259   ggcttcgcgctcgcgctcctc 279
             |||||||||||||||||||||
Sbjct: 72921 ggcttcgcgctcgcgctcctc 72901
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>dbj|AK105944.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C03, full
           insert sequence
          Length = 1715

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 259 ggcttcgcgctcgcgctcctc 279
           |||||||||||||||||||||
Sbjct: 845 ggcttcgcgctcgcgctcctc 865
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>dbj|AK070880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064I03, full
            insert sequence
          Length = 3618

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 259  ggcttcgcgctcgcgctcctc 279
            |||||||||||||||||||||
Sbjct: 2711 ggcttcgcgctcgcgctcctc 2731
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>gb|AC158537.2| Mus musculus BAC clone RP23-2H7 from chromosome 14, complete sequence
          Length = 204554

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      tccctttctctctccccgtc 20
              ||||||||||||||||||||
Sbjct: 118844 tccctttctctctccccgtc 118825
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>ref|XM_468544.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1907

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 276 cctcggcctcgcctcctccc 295
           ||||||||||||||||||||
Sbjct: 402 cctcggcctcgcctcctccc 421
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>ref|XM_479145.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3115

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 279 cggcctcgcctcctccccgc 298
           ||||||||||||||||||||
Sbjct: 204 cggcctcgcctcctccccgc 223
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>ref|XM_507389.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1003_H02.130
           mRNA
          Length = 3117

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 279 cggcctcgcctcctccccgc 298
           ||||||||||||||||||||
Sbjct: 206 cggcctcgcctcctccccgc 225
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>ref|XM_506459.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1003_H02.130
           mRNA
          Length = 3209

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 279 cggcctcgcctcctccccgc 298
           ||||||||||||||||||||
Sbjct: 298 cggcctcgcctcctccccgc 317
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>gb|BT017810.1| Zea mays clone EL01N0507A04.c mRNA sequence
          Length = 1011

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 ggaggtgccgccggagatgc 160
           ||||||||||||||||||||
Sbjct: 239 ggaggtgccgccggagatgc 258
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>gb|AY725781.1| Oncometopia nigricans putative rhodopsin mRNA, complete cds
          Length = 1146

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 143 aggtgccgccggagatgctc 162
           ||||||||||||||||||||
Sbjct: 83  aggtgccgccggagatgctc 102
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>emb|AL136221.38| Human DNA sequence from clone RP11-391H12 on chromosome 13 Contains the
              CUL4A gene for cullin 4A, the LAMP1 gene for
              lysosomal-associated membrane protein 1, the GRTP1 gene for
              growth hormone regulated TBC protein 1, a novel gene, the
              5' end of a novel gene (FLJ11305) an LDHB (lactate
              dehydrogenase B) pseudogene and six CpG islands, complete
              sequence
          Length = 188896

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     acccccttcccctcttctcc 42
              ||||||||||||||||||||
Sbjct: 163051 acccccttcccctcttctcc 163070
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>gb|DQ442996.1| Triticum aestivum phosphomannomutase mRNA, complete cds
          Length = 750

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 141 ggaggtgccgccggagatgctcga 164
           ||||||| ||||||||||||||||
Sbjct: 75  ggaggtgacgccggagatgctcga 98
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>gb|AC124591.4| Mus musculus BAC clone RP23-136G17 from chromosome 8, complete sequence
          Length = 201039

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    cccttcccctcttctccacg 45
             ||||||||||||||||||||
Sbjct: 98543 cccttcccctcttctccacg 98562
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 276      cctcggcctcgcctcctccc 295
                ||||||||||||||||||||
Sbjct: 14902733 cctcggcctcgcctcctccc 14902752
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 279      cggcctcgcctcctccccgc 298
                ||||||||||||||||||||
Sbjct: 25186482 cggcctcgcctcctccccgc 25186501
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 276      cctcggcctcgcctcctccc 295
                ||||||||||||||||||||
Sbjct: 35769385 cctcggcctcgcctcctccc 35769366
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 268     ctcgcgctcctcggcctcgc 287
               ||||||||||||||||||||
Sbjct: 4470172 ctcgcgctcctcggcctcgc 4470191



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 263    tcgcgctcgcgctcctcggc 282
              ||||||||||||||||||||
Sbjct: 329708 tcgcgctcgcgctcctcggc 329689
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>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0616D06
          Length = 153800

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 279  cggcctcgcctcctccccgc 298
            ||||||||||||||||||||
Sbjct: 3153 cggcctcgcctcctccccgc 3172
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>dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0014G10
          Length = 164147

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    cctcggcctcgcctcctccc 295
              ||||||||||||||||||||
Sbjct: 111072 cctcggcctcgcctcctccc 111091
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>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1149_C12
          Length = 120743

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   cctcggcctcgcctcctccc 295
             ||||||||||||||||||||
Sbjct: 40100 cctcggcctcgcctcctccc 40081
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>dbj|AK106898.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-H04, full
           insert sequence
          Length = 4032

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 279 cggcctcgcctcctccccgc 298
           ||||||||||||||||||||
Sbjct: 204 cggcctcgcctcctccccgc 223
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>dbj|AK106522.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-D01, full
           insert sequence
          Length = 1794

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 276 cctcggcctcgcctcctccc 295
           ||||||||||||||||||||
Sbjct: 289 cctcggcctcgcctcctccc 308
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>dbj|AK101449.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033039M15, full
           insert sequence
          Length = 1905

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 276 cctcggcctcgcctcctccc 295
           ||||||||||||||||||||
Sbjct: 402 cctcggcctcgcctcctccc 421
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>dbj|AK099895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113L09, full
           insert sequence
          Length = 3584

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 279 cggcctcgcctcctccccgc 298
           ||||||||||||||||||||
Sbjct: 300 cggcctcgcctcctccccgc 319
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>dbj|AK067398.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106D10, full
           insert sequence
          Length = 3490

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 279 cggcctcgcctcctccccgc 298
           ||||||||||||||||||||
Sbjct: 206 cggcctcgcctcctccccgc 225
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>dbj|AP003700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1003_H02
          Length = 124043

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    cggcctcgcctcctccccgc 298
              ||||||||||||||||||||
Sbjct: 106969 cggcctcgcctcctccccgc 106988
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>gb|AY103805.1| Zea mays PCO119314 mRNA sequence
          Length = 1791

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 acccccttcccctcttctcc 42
          ||||||||||||||||||||
Sbjct: 39 acccccttcccctcttctcc 58
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>gb|BC093401.1| Rattus norvegicus cathepsin W, mRNA (cDNA clone MGC:112764
           IMAGE:7389584), complete cds
          Length = 1272

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 67  acctcgccgctccaccccct 86
           ||||||||||||||||||||
Sbjct: 947 acctcgccgctccaccccct 966
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>gb|AC162945.5| Mus musculus BAC clone RP23-60O19 from chromosome 8, complete sequence
          Length = 221852

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     cccttcccctcttctccacg 45
              ||||||||||||||||||||
Sbjct: 196548 cccttcccctcttctccacg 196567
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>ref|NM_001024242.1| Rattus norvegicus cathepsin W (Ctsw), mRNA
          Length = 1272

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 67  acctcgccgctccaccccct 86
           ||||||||||||||||||||
Sbjct: 947 acctcgccgctccaccccct 966
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>gb|AC114897.43| Mus musculus strain C57BL/6J clone rp23-158e11 map 8, complete sequence
          Length = 202175

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    cccttcccctcttctccacg 45
             ||||||||||||||||||||
Sbjct: 98783 cccttcccctcttctccacg 98802


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,299,662
Number of Sequences: 3902068
Number of extensions: 2299662
Number of successful extensions: 56534
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55970
Number of HSP's gapped (non-prelim): 564
length of query: 310
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 288
effective length of database: 17,147,199,772
effective search space: 4938393534336
effective search space used: 4938393534336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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