>RCOR2_XENLA (Q6NRZ0) REST corepressor 2|
          Length = 503

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
 Frame = +3

Query: 96  CQAVLRLSMSSTRKVRNVNKRYAKINEDWPEKDATVVHKNKVRKKKLS-DLGSQWSKDEL 272
           CQ   +L +S  R+V+N+ +  + +      K++     +++R  +L+  L ++W+ DE 
Sbjct: 285 CQLETQL-ISLKRQVQNIKQMNSSL------KESLEGGISEMRPPELNIKLNARWTTDEQ 337

Query: 273 EHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALY 371
                A RKYGKD++ ++  + ++T   V+  +
Sbjct: 338 LLAVQAVRKYGKDFQAISEVLGNKTPSQVKTFF 370

>SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily C member 1 (SWI/SNF
           complex 155 kDa subunit) (BRG1-associated factor 155)
           (SWI3-related protein)
          Length = 1104

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 201 VVHKNKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSD 353
           +  K  + K K +  G +W++ E      A   Y  DW KV+  V  RT D
Sbjct: 604 IYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQD 654

>SMRC1_HUMAN (Q92922) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily C member 1 (SWI/SNF
           complex 155 kDa subunit) (BRG1-associated factor 155)
          Length = 1105

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 201 VVHKNKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSD 353
           +  K  + K K +  G +W++ E      A   Y  DW KV+  V  RT D
Sbjct: 605 IYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQD 655

>SWI3_YEAST (P32591) Transcription regulatory protein SWI3 (SWI/SNF complex|
           component SWI3) (Transcription factor TYE2)
          Length = 825

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 228 KKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSD 353
           K L  +   WSK++L+      +++G DW KVA  V +++ +
Sbjct: 518 KILEQIDENWSKEDLQKLLKGIQEFGADWYKVAKNVGNKSPE 559

>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing|
           mediator of retinoic acid and thyroid hormone receptor)
           (SMRT) (SMRTe) (Thyroid-,
           retinoic-acid-receptor-associated corepressor) (T3
           receptor-associating factor) (TRAC)
          Length = 2472

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 15/67 (22%), Positives = 35/67 (52%)
 Frame = +3

Query: 171 NEDWPEKDATVVHKNKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTS 350
           NE   E+ AT    +++   ++++  S+W+++E+E       ++G++W  +A  V  +T 
Sbjct: 584 NEANHEETATPQQSSELASMEMNE-SSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTV 642

Query: 351 DMVEALY 371
              +  Y
Sbjct: 643 SQCKNFY 649

>MYSM1_CHICK (Q5F3F2) Protein MYSM1 (Myb-like, SWIRM and MPN domain-containing|
           protein 1)
          Length = 832

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 252 QWSKDELEHFYGAYRKYGKDWRKVAGAVHDRT 347
           +W+ +E E F     KYG+ W K+A  +  RT
Sbjct: 121 KWTSEEKELFEQGLVKYGRRWTKIAKLIGSRT 152

>RCOR2_RAT (Q5FWT8) REST corepressor 2|
          Length = 523

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 249 SQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALY 371
           S+W+ DE      A R+YGKD+  +A  + ++T   V+  +
Sbjct: 330 SRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFF 370

>RCOR2_MOUSE (Q8C796) REST corepressor 2 (M-CoREST)|
          Length = 523

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 249 SQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALY 371
           S+W+ DE      A R+YGKD+  +A  + ++T   V+  +
Sbjct: 330 SRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFF 370

>RCOR2_HUMAN (Q8IZ40) REST corepressor 2|
          Length = 523

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 249 SQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALY 371
           S+W+ DE      A R+YGKD+  +A  + ++T   V+  +
Sbjct: 330 SRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFF 370

>NIP80_YEAST (P33420) Protein NIP80 (Protein NIP100)|
          Length = 868

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 165 KINEDWPEKDATVVHKNKVRKKKLSDLGSQ 254
           K+ ED  E++  ++ +N V  KK+SDLG Q
Sbjct: 219 KVQEDLLEENTQLLEENAVLSKKISDLGLQ 248

>RCOR2_BRARE (Q6P116) REST corepressor 2|
          Length = 536

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 243 LGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALY 371
           + S+W+ +E      A R+YGKD+  +A  + ++T   V + +
Sbjct: 329 INSRWTTEEQLLAVQAVRRYGKDFAAIADVIGNKTVAQVSSFF 371

>V362_ASFB7 (P23166) K'362 protein|
          Length = 362

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 264 DELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVE 362
           + +++FY  YR + KDWR + G   +  SD+ E
Sbjct: 194 EAIQYFYQRYRHF-KDWRLICGLSFNNVSDLHE 225

>RCOR_DROME (Q59E36) REST corepressor (CoREST)|
          Length = 657

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 243 LGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALY 371
           + ++W  DE++    A R+YGK++  +A  V  +T   V   Y
Sbjct: 370 ISARWLPDEIQVALLAIREYGKNFPTIAKVVATKTEAHVRTFY 412

>ISW2_ARATH (Q8RWY3) Putative chromatin remodelling complex ATPase chain (EC|
            3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2
            homolog)
          Length = 1057

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
 Frame = +3

Query: 105  VLRLSMSSTRKVRNVNKRYAK------INEDWPEKDATVVHKNKVRKKKLSDLG-SQWSK 263
            + RL+    ++VR + + + K      I+ + PE    +  +    K+ L + G S WS+
Sbjct: 789  IQRLTELYEKEVRYLMQTHQKNQLKDTIDVEEPEGGDPLTTEEVEEKEGLLEEGFSTWSR 848

Query: 264  DELEHFYGAYRKYGK-DWRKVAGAVHDRTSDMVE 362
             +   F  A  KYG+ D + +A  +  +T + VE
Sbjct: 849  RDFNTFLRACEKYGRNDIKSIASEMEGKTEEEVE 882

>RAD50_AQUAE (O67124) Probable DNA double-strand break repair rad50 ATPase|
          Length = 978

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 132 RKVRNVNKRYAKINEDWPEKDATVVHKNKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKD 311
           +K+ ++ +   K+  +  E    +    K R KKL +L  +  K++LEH    YRK  +D
Sbjct: 532 QKINSLKEEMEKLRNEVEELRKEIPENLKERIKKLEELRIE--KEKLEHKLNKYRKALED 589

Query: 312 WRK 320
            +K
Sbjct: 590 RQK 592

>ISW2_ORYSA (Q7G8Y3) Putative chromatin remodelling complex ATPase chain (EC|
            3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2
            homolog)
          Length = 1107

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = +3

Query: 99   QAVLRLSMSSTRKVRNVNKRYAKIN-EDWPEKDATVVHKNKVRKKKLSDLGSQWSKDELE 275
            Q +  L     R +   N++   I+ ED  + +     + + +++ L +  + W++ +  
Sbjct: 829  QRLNELYEKEVRYLMQANQKKDTIDGEDEDQLEPLTAEEQEEKEQLLEEGFATWTRRDFN 888

Query: 276  HFYGAYRKYGK-DWRKVAGAVHDRTSDMVE 362
             F  A  KYG+ D R +A  +  +T + V+
Sbjct: 889  TFIRACEKYGRNDIRSIAAEMEGKTEEEVQ 918

>PACC_EMENI (Q00202) pH-response transcription factor pacC/RIM101|
          Length = 678

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 363 PPPYQMFYHGPHQPPSSNLFHIFYKLHRSAPTHLCSTENQGR 238
           PP Y   +H P QP + +  +++Y L+     H  S E++ R
Sbjct: 214 PPQYYQAHHAP-QPSNPSYGNVYYALNTGPEPHQASYESKKR 254

>MB3R1_ARATH (Q9S7G7) Myb-related protein 3R-1 (Plant c-MYB-like protein 1)|
           (Protein PC-MYB1) (PC-MYB1)
          Length = 776

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 252 QWSKDELEHFYGAYRKY-GKDWRKVAGAVHDRT 347
           QW+ +E E    A  ++ GK+W+K+A    DRT
Sbjct: 37  QWTPEEDEVLCKAVERFQGKNWKKIAECFKDRT 69

>MIAA_DESPS (Q6ALW6) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 314

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 153 KRYAKINEDWPEKDATVVHKNKVRKKKLSDLGSQWSKDEL 272
           +RYAK    W  KD  +    K  K ++ D   QW +D+L
Sbjct: 271 RRYAKRQYTWFNKDEDLHWYQKESKAEIVDRVGQWLEDQL 310


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,258,177
Number of Sequences: 219361
Number of extensions: 1294726
Number of successful extensions: 3867
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3866
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)