ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GUN_MYTED (P82186) Endoglucanase (EC 3.2.1.4) (Endo-1,4-beta-glu... 30 1.8
2TPP1_RAT (Q9EQV6) Tripeptidyl-peptidase 1 precursor (EC 3.4.14.9... 28 6.8
3LSHB_GORGO (Q2Q1P1) Lutropin beta chain precursor (Luteinizing h... 27 8.8
4METB_ECOLI (P00935) Cystathionine gamma-synthase (EC 2.5.1.48) (... 27 8.8

>GUN_MYTED (P82186) Endoglucanase (EC 3.2.1.4) (Endo-1,4-beta-glucanase)|
           (Cellulase) (CMCASE)
          Length = 181

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 32  GWNQT*TPYPPHVSNCDCGAPHDHNNPSSS 121
           GWN   T +   V NCD    HDH  PS+S
Sbjct: 144 GWNNPETTW--EVVNCDSEHNHDHRTPSNS 171



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>TPP1_RAT (Q9EQV6) Tripeptidyl-peptidase 1 precursor (EC 3.4.14.9)|
           (Tripeptidyl-peptidase I) (TPP-I) (Tripeptidyl
           aminopeptidase)
          Length = 563

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 215 HRRPPLTWKREREQPRGEGFPRLH 286
           HR PPL+  R+R +P+G G   LH
Sbjct: 174 HRFPPLSSPRQRPEPQGVGPVGLH 197



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>LSHB_GORGO (Q2Q1P1) Lutropin beta chain precursor (Luteinizing hormone beta|
           subunit) (LSH-beta) (LSH-B) (LH-B)
          Length = 141

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = +2

Query: 59  PPHVSNCDCGAPHDH----NNPSSSSLISL 136
           P H S  DCG P+DH    ++P  S L+ L
Sbjct: 112 PCHRSTSDCGGPNDHPLTCDHPQLSGLLFL 141



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>METB_ECOLI (P00935) Cystathionine gamma-synthase (EC 2.5.1.48) (CGS)|
           (O-succinylhomoserine (thiol)-lyase)
          Length = 386

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 127 HLSLRANQSEYNSPYAHAHIGRSNPT---VQKA 216
           HLS   N + +N P AH +  R NPT   VQ+A
Sbjct: 28  HLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRA 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.129    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,630,022
Number of Sequences: 219361
Number of extensions: 963149
Number of successful extensions: 2486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2486
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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