ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl11c05 |
|---|---|
| Clone Library Name | barley_pub |
>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 480 Score = 33.1 bits (74), Expect = 0.31 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = +1 Query: 46 SHEHTRNLHTQTQTPRNQQRHPARPTLAPPPSHPSRQNHP 165 SH H + H Q + HP P PPP P +Q P Sbjct: 36 SHGHHNSHHPQHHHHHHHHHHPPPPAPQPPPPPPQQQQQP 75
>PKN2_COREF (Q8FUI4) Serine/threonine protein kinases drp72 (EC 2.7.11.1)| Length = 520 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = +1 Query: 73 TQTQTPRNQQRHPARPTLAPPPSHPSRQNHP 165 TQT TP + PTLAPPP P+RQ P Sbjct: 379 TQTVTP-TETTTSEEPTLAPPPVQPTRQPVP 408
>FOXGB_MOUSE (Q60987) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 481 Score = 30.4 bits (67), Expect = 2.0 Identities = 13/37 (35%), Positives = 16/37 (43%) Frame = +1 Query: 46 SHEHTRNLHTQTQTPRNQQRHPARPTLAPPPSHPSRQ 156 SH H + H Q + HP P PPP P +Q Sbjct: 36 SHGHHNSHHPQHHHHHHHHHHPPPPAPQPPPPPPQQQ 72
>GAG_AVEV1 (P06936) Gag polyprotein (Core polyprotein) [Contains: Core protein| p19; Core protein p23; Core protein p2; Core protein p10] (Fragment) Length = 239 Score = 30.4 bits (67), Expect = 2.0 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 292 APPPPRTARGVFPSVAKRGRREINGG 215 APPPP G++PS+A G ++ GG Sbjct: 170 APPPPYVGSGLYPSLAGVGEQQGQGG 195
>GAGC_AVISC (P05433) P47(GAG-CRK) protein| Length = 440 Score = 30.4 bits (67), Expect = 2.0 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 292 APPPPRTARGVFPSVAKRGRREINGG 215 APPPP G++PS+A G ++ GG Sbjct: 172 APPPPYVGSGLYPSLAGVGEQQGQGG 197
>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein| p2A; Core protein p2B; Core protein p10; Capsid protein p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)] Length = 701 Score = 30.4 bits (67), Expect = 2.0 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 292 APPPPRTARGVFPSVAKRGRREINGG 215 APPPP G++PS+A G ++ GG Sbjct: 170 APPPPYVGSGLYPSLAGVGEQQGQGG 195
>GAG_FUJSV (P03326) Gag polyprotein [Contains: Core protein p19; Core protein| p10; Core protein p27] Length = 309 Score = 30.4 bits (67), Expect = 2.0 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 292 APPPPRTARGVFPSVAKRGRREINGG 215 APPPP G++PS+A G ++ GG Sbjct: 166 APPPPYVGSGLYPSLAGVGEQQGQGG 191
>GAG_AVEV2 (P06937) Gag polyprotein (Core polyprotein) [Contains: Core protein| p19 beta; Core protein p10] (Fragment) Length = 188 Score = 30.4 bits (67), Expect = 2.0 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 292 APPPPRTARGVFPSVAKRGRREINGG 215 APPPP G++PS+A G ++ GG Sbjct: 119 APPPPYVGSGLYPSLAGVGEQQGQGG 144
>GAG_AVIMC (P03323) Gag polyprotein [Contains: Core protein p19; Core protein| p10; Core protein p27] Length = 453 Score = 30.4 bits (67), Expect = 2.0 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 292 APPPPRTARGVFPSVAKRGRREINGG 215 APPPP G++PS+A G ++ GG Sbjct: 170 APPPPYVGSGLYPSLAGVGEQQGQGG 195
>NCAP_BSCR3 (Q3I5I7) Nucleocapsid protein (N structural protein) (NC)| Length = 421 Score = 30.0 bits (66), Expect = 2.6 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 255 GNTPRAVRGGGGAS*LSCLVVDAATSARIAVGGREQAQ 368 GN+P + GGG + L+ L++D V GR Q Q Sbjct: 204 GNSPARMASGGGETALALLLLDRLNQLESKVSGRSQQQ 241
>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein| 1 (PRAX-1) (Peripheral benzodiazepine receptor-interacting protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1) Length = 1846 Score = 29.6 bits (65), Expect = 3.4 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +1 Query: 67 LHTQTQTPRNQQRHPARPTLAPPPSHPSRQNHP 165 L Q Q QR P RP +P P+ PSR P Sbjct: 271 LRLQRQIALRNQREPLRPARSPGPTAPSRVGAP 303
>GAG_AVIMD (P06444) Gag polyprotein [Contains: Core protein p19; Core protein| p10; Core protein p27] Length = 453 Score = 29.3 bits (64), Expect = 4.4 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 Query: 292 APPPPRTARGVFPSVAKRGRREINGG 215 APPPP G++PS+A G + GG Sbjct: 170 APPPPYVGSGLYPSLAGVGELQGQGG 195
>SAV_DROME (Q9VCR6) Scaffold protein salvador (Shar-pei)| Length = 608 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +1 Query: 76 QTQTPRNQQRHPARPTLAPPPSHPSRQNHP 165 Q+Q P Q H + P P PSHP ++HP Sbjct: 99 QSQMPLQQHSH-SHPHSLPHPSHPHVRSHP 127
>THYG_BOVIN (P01267) Thyroglobulin precursor| Length = 2769 Score = 28.1 bits (61), Expect = 9.9 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = -1 Query: 323 CVDDQTRELXXXXXXADRARCVPECG*KRA 234 CVD Q REL R RC EC +RA Sbjct: 637 CVDAQGRELAGSRVRGGRPRCPTECEKQRA 666
>CD2L6_MOUSE (Q8BWD8) Cell division cycle 2-like protein kinase 6 (EC 2.7.11.22)| (CDC2-related protein kinase 6) Length = 501 Score = 28.1 bits (61), Expect = 9.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +1 Query: 76 QTQTPRNQQRHPARPTLAPPPSHPSRQN 159 Q Q P Q PA+ T APP + P +Q+ Sbjct: 374 QQQNPHQQPAAPAQQTAAPPQAPPPQQS 401
>OSBL9_HUMAN (Q96SU4) Oxysterol-binding protein-related protein 9 (OSBP-related| protein 9) (ORP-9) Length = 736 Score = 28.1 bits (61), Expect = 9.9 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Frame = +3 Query: 141 PSISPKPSIHY*PEEDAXXXXXXXRPPLISLRPLLATLGN--TPRAVRGGGGAS 296 P IS PS P E RP + + P+LATLG+ TP G G S Sbjct: 211 PVISTMPSQTVLPPEPVQLCKSEQRPSSLPVGPVLATLGHHQTPTPNSTGSGHS 264
>MODC_MYCTU (P95155) Molybdenum import ATP-binding protein modC (EC 3.6.3.29)| Length = 369 Score = 28.1 bits (61), Expect = 9.9 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +3 Query: 282 GGGAS*LSCLVVDAATSARIAVGGR 356 GG +C+ VDAAT R+A G R Sbjct: 323 GGAPGLAACITVDAATELRVAPGSR 347
>NCAP_CVHSA (P59595) Nucleocapsid protein (N structural protein) (NC)| Length = 422 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +3 Query: 255 GNTPRAVRGGGGAS*LSCLVVDAATSARIAVGGREQAQ 368 GN+P + GGG + L+ L++D V G+ Q Q Sbjct: 205 GNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQ 242 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,552,024 Number of Sequences: 219361 Number of extensions: 973053 Number of successful extensions: 3503 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3207 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3485 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
