>VPP3_HUMAN (Q13488) Vacuolar proton translocating ATPase 116 kDa subunit a|
           isoform 3 (V-ATPase 116-kDa isoform a3) (Osteoclastic
           proton pump 116 kDa subunit) (OC-116 kDa) (OC116)
           (T-cell immune regulator 1) (T cell immune response
           cDNA7 protein) (TIRC7)
          Length = 830

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 25/54 (46%), Positives = 37/54 (68%)
 Frame = +1

Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           + RSE + L+Q+ +PT +A+  VS LG+LGL++F DLNA  S FQR +   + R
Sbjct: 4   MFRSEEVALVQLFLPTAAAYTCVSRLGELGLVEFRDLNASVSAFQRRFVVDVWR 57

>VPP1_CAEEL (P30628) Probable vacuolar proton translocating ATPase 116 kDa|
           subunit a (Uncoordinated protein 32)
          Length = 905

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 25/58 (43%), Positives = 38/58 (65%)
 Frame = +1

Query: 160 PSMDLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           P   + RSE M L Q+ + +++++  V+ LG+LGL+QF DLN D S FQR Y  ++ R
Sbjct: 12  PQPGIYRSEQMCLAQLYLQSDASYQCVAELGELGLVQFRDLNPDVSSFQRKYVNEVRR 69

>VPP1_PONPY (Q5R422) Vacuolar proton translocating ATPase 116 kDa subunit a|
           isoform 1 (V-ATPase 116-kDa isoform a1)
          Length = 837

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 25/55 (45%), Positives = 37/55 (67%)
 Frame = +1

Query: 169 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           +L RSE M L Q+ + +E+A+  VS LG+LG +QF DLN D + FQR +  ++ R
Sbjct: 3   ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRR 57

>VPP1_HUMAN (Q93050) Vacuolar proton translocating ATPase 116 kDa subunit a|
           isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit)
           (Vacuolar proton pump subunit 1) (Vacuolar adenosine
           triphosphatase
          Length = 837

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 25/55 (45%), Positives = 37/55 (67%)
 Frame = +1

Query: 169 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           +L RSE M L Q+ + +E+A+  VS LG+LG +QF DLN D + FQR +  ++ R
Sbjct: 3   ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRR 57

>VPP1_BOVIN (Q29466) Vacuolar proton translocating ATPase 116 kDa subunit a|
           isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit)
           (Vacuolar proton pump subunit 1) (Vacuolar adenosine
           triphosphatase
          Length = 838

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 25/55 (45%), Positives = 37/55 (67%)
 Frame = +1

Query: 169 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           +L RSE M L Q+ + +E+A+  VS LG+LG +QF DLN D + FQR +  ++ R
Sbjct: 3   ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRR 57

>VPP1_MOUSE (Q9Z1G4) Vacuolar proton translocating ATPase 116 kDa subunit a|
           isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit)
           (Vacuolar proton pump subunit 1) (Vacuolar adenosine
           triphosphatase
          Length = 839

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 25/55 (45%), Positives = 37/55 (67%)
 Frame = +1

Query: 169 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           +L RSE M L Q+ + +E+A+  VS LG+LG +QF DLN D + FQR +  ++ R
Sbjct: 3   ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRR 57

>VPP4_MOUSE (Q920R6) Vacuolar proton translocating ATPase 116 kDa subunit a|
           isoform 4 (V-ATPase 116-kDa isoform a4) (Vacuolar proton
           translocating ATPase 116 kDa subunit a kidney isoform)
          Length = 833

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 25/54 (46%), Positives = 37/54 (68%)
 Frame = +1

Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           + RSE M L QV +  E+A+  V+ LG+LGL+QF DLNA+ + FQR +  ++ R
Sbjct: 4   VFRSEEMCLSQVFLQVEAAYCCVAELGELGLVQFKDLNANVNSFQRKFVNEVRR 57

>VPP1_RAT (P25286) Vacuolar proton translocating ATPase 116 kDa subunit a|
           isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit)
           (Vacuolar proton pump subunit 1) (Vacuolar adenosine
           triphosphatase su
          Length = 838

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 24/55 (43%), Positives = 36/55 (65%)
 Frame = +1

Query: 169 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           +L RSE M L Q+ + +E+A+  VS L +LG +QF DLN D + FQR +  ++ R
Sbjct: 3   ELFRSEEMTLAQLFLQSEAAYCCVSELEELGKVQFRDLNPDVNVFQRKFVNEVRR 57

>VPP4_HUMAN (Q9HBG4) Vacuolar proton translocating ATPase 116 kDa subunit a|
           isoform 4 (V-ATPase 116-kDa isoform a4) (Vacuolar proton
           translocating ATPase 116 kDa subunit a kidney isoform)
          Length = 840

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 23/54 (42%), Positives = 36/54 (66%)
 Frame = +1

Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           + RSE M L Q+ +  E+A+  V+ LG+LGL+QF DLN + + FQR +  ++ R
Sbjct: 4   VFRSEEMCLSQLFLQVEAAYCCVAELGELGLVQFKDLNMNVNSFQRKFVNEVRR 57

>VPP2_MOUSE (P15920) Vacuolar proton translocating ATPase 116 kDa subunit a|
           isoform 2 (V-ATPase 116-kDa isoform a2) (Immune
           suppressor factor J6B7)
          Length = 856

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 23/54 (42%), Positives = 36/54 (66%)
 Frame = +1

Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           L RSE+M L Q+ + + +A+  +S LG+ GL+QF DLN + S FQR +  ++ R
Sbjct: 4   LFRSESMCLAQLFLQSGTAYECLSALGEKGLVQFRDLNQNVSSFQRKFVGEVKR 57

>VPP2_HUMAN (Q9Y487) Vacuolar proton translocating ATPase 116 kDa subunit a|
           isoform 2 (V-ATPase 116-kDa isoform a2) (TJ6)
          Length = 856

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 23/54 (42%), Positives = 35/54 (64%)
 Frame = +1

Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           L RSE M L Q+ + + +A+  +S LG+ GL+QF DLN + S FQR +  ++ R
Sbjct: 4   LFRSETMCLAQLFLQSGTAYECLSALGEKGLVQFRDLNQNVSSFQRKFVGEVKR 57

>VPP2_BOVIN (O97681) Vacuolar proton translocating ATPase 116 kDa subunit A|
           isoform 2 (V-ATPase 116-kDa isoform a2)
          Length = 854

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = +1

Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           L RSE M L Q+ + + +A+  +S LG+ GL++F DLN + S FQR +  ++ R
Sbjct: 4   LFRSETMCLAQLFLQSGTAYECLSVLGEKGLVEFRDLNQNVSSFQRKFVGEVKR 57

>VPH1_YEAST (P32563) Vacuolar ATP synthase subunit a, vacuolar isoform (EC|
           3.6.3.14) (V-ATPase a subunit) (Vacuolar proton pump a
           subunit) (V-ATPase 95 kDa subunit) (Vacuolar pH protein
           1)
          Length = 839

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 24/54 (44%), Positives = 32/54 (59%)
 Frame = +1

Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           + RS  M L+Q  IP E +  +   LG LGL+QF DLN+    FQRT+  +I R
Sbjct: 7   IFRSAEMALVQFYIPQEISRDSAYTLGQLGLVQFRDLNSKVRAFQRTFVNEIRR 60

>VPH1_NEUCR (Q01290) Vacuolar ATP synthase 98 kDa subunit (Vacuolar ATPase 98|
           kDa subunit)
          Length = 856

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 21/52 (40%), Positives = 30/52 (57%)
 Frame = +1

Query: 178 RSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           RS  M ++Q+ I  E      + LG+LGL+ F DLN++ S FQR +   I R
Sbjct: 10  RSADMSMVQLYISNEIGREVCNALGELGLVHFRDLNSELSAFQRAFTQDIRR 61

>STV1_YEAST (P37296) Vacuolar ATP synthase subunit a, Golgi isoform (EC|
           3.6.3.14) (V-ATPase 101 kDa subunit) (V-ATPase subunit
           AC115) (Similar to VPH1 protein 1)
          Length = 890

 Score = 35.4 bits (80), Expect = 0.036
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +1

Query: 172 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           + RS  M  +Q+ IP E        LG + +    DLN D + FQR Y  Q+ R
Sbjct: 7   IFRSADMTYVQLYIPLEVIREVTFLLGKMSVFMVMDLNKDLTAFQRGYVNQLRR 60

>VPH1_SCHPO (O13742) Probable vacuolar ATP synthase 91 kDa subunit (Vacuolar|
           ATPase 91 kDa subunit)
          Length = 805

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 238 VSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           +S LG+L  I F DLN D   FQR++  +I R
Sbjct: 1   MSALGELSTIHFKDLNPDVVAFQRSFVREIRR 32

>FLCN_BOVIN (Q3B7L5) Folliculin|
          Length = 579

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -1

Query: 300 RAFVCVEVXELDEAQIAEVGDGEVRGLGGDND---LQELHRLRPHQIHRGAAAPSAA 139
           R   C EV      Q A  GDG  RG   D +   +Q   R+R H    GA+A S++
Sbjct: 17  RTLFCTEVLHAPLPQGAGSGDGAGRGEPADEEEGGIQMSSRIRAHSPAEGASAESSS 73

>PSB4_SCHPO (Q9USQ9) Probable proteasome subunit beta type 4 (EC 3.4.25.1)|
          Length = 262

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 327 DLCSVGALKRAFVCVEVXELDEAQIAEVGDGEVRGLGGD-NDLQELHRL 184
           +L S G+L R +        D  ++ +VGD  + G GGD +D Q++ RL
Sbjct: 61  NLASYGSLARFY--------DVERLTKVGDNTIVGAGGDISDYQQIQRL 101

>ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2 (Receiver-like|
           protein 5)
          Length = 664

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 315 VGALKRAFVCVEVXELDEAQIAEVGDGEVRGLGGDNDLQELHR 187
           + ALK  +  V   + +E  ++E   G +   GGD D Q+ HR
Sbjct: 133 IEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHR 175

>PKN1_CHLMU (Q9PKP3) Serine/threonine-protein kinase pkn1 (EC 2.7.11.1)|
          Length = 614

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 303 KRAFVCVEVXELDEAQIAEVGDGEV--RGLGGDNDLQELHRLRP 178
           ++AFV VE   +DEA +  V   EV   G G  N LQ L    P
Sbjct: 315 QQAFVLVEAKSIDEAMVTTVDSEEVSESGEGYVNPLQSLLAREP 358

>GIDA_XANOR (Q5H6D9) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 634

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 235 AVSHLGDLGLIQFXDLNADKSPFQRTYAAQIXR 333
           A++H  DL  IQ+  LNA K P  R    Q  R
Sbjct: 70  AMAHAADLAGIQWRTLNASKGPAVRATRCQADR 102

>GEMI5_HUMAN (Q8TEQ6) Gem-associated protein 5 (Gemin5)|
          Length = 1508

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = -2

Query: 260 PRSPRWETARCADSV--GI--MTCRSCIASDRIRSIEGQQP--PPLRAM 132
           P SP W  ARC+D+V  G+     R+ +   R+    G+ P  PP R +
Sbjct: 9   PPSPNWYCARCSDAVPGGLFGFAARTSVFLVRVGPGAGESPGTPPFRVI 57


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,044,397
Number of Sequences: 219361
Number of extensions: 436032
Number of successful extensions: 1466
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)