Clone Information

BLAST Search Result

Clone Name	bastl11c04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_195204.1\| Oryza sativa (japonica cultivar-group) putative...	174	1e-40
2	dbj\|AK119298.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	172	5e-40
3	dbj\|AK101151.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	172	5e-40
4	gb\|AC093568.2\| Oryza sativa chromosome 10 clone OSJNBa0029P16, c...	159	7e-36
5	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	159	7e-36
6	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	159	7e-36
7	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	143	4e-31
8	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	143	4e-31
9	gb\|AC134240.2\| Oryza sativa (japonica cultivar-group) chromosome...	143	4e-31
10	gb\|AC134235.2\| Oryza sativa (japonica cultivar-group) chromosome...	143	4e-31
11	ref\|NM_120068.3\| Arabidopsis thaliana ATPase AT4G39080 mRNA, com...	56	7e-05
12	gb\|AY060557.1\| Arabidopsis thaliana AT4g39080/F19H22_180 mRNA, c...	56	7e-05
13	gb\|BT002615.1\| Arabidopsis thaliana At4g39080/F19H22_180 mRNA, c...	56	7e-05
14	ref\|XM_518361.1\| PREDICTED: Pan troglodytes similar to Valyl-tRN...	42	1.1
15	gb\|AF134726.1\| Homo sapiens BAC clone 215O12 NG35, NG36, G9A, NG...	42	1.1
16	ref\|NM_006295.2\| Homo sapiens valyl-tRNA synthetase (VARS), mRNA	42	1.1
17	emb\|AL929592.8\| Human DNA sequence from clone DAQB-147D11 on chr...	42	1.1
18	emb\|AL671762.10\| Human DNA sequence from clone XXbac-254B15 on c...	42	1.1
19	emb\|AL662834.8\| Human DNA sequence from clone XXbac-40G17 on chr...	42	1.1
20	emb\|AL939108.1\|SCO939108 Streptomyces coelicolor A3(2) complete ...	42	1.1
21	emb\|AL591985.1\|RME591985 Sinorhizobium meliloti 1021 complete pSymB	42	1.1
22	emb\|CR925765.2\| Human DNA sequence from clone DADB-149K5 on chro...	42	1.1
23	emb\|CR759915.6\| Human DNA sequence from clone DAAP-21F2 on chrom...	42	1.1
24	emb\|CR759787.4\| Human DNA sequence from clone DAMC-117B11 on chr...	42	1.1
25	dbj\|BA000025.2\| Homo sapiens genomic DNA, chromosome 6p21.3, HLA...	42	1.1
26	emb\|AJ438978.1\|MCR438978 Mesembryanthemum crystallinum mRNA for ...	42	1.1
27	emb\|AL935270.6\| Mouse DNA sequence from clone RP23-391A14 on chr...	42	1.1
28	emb\|AL132713.11\|HSDJ71I17 Human DNA sequence from clone RP1-71I1...	42	1.1
29	gb\|AC098644.4\| Takifugu rubripes clone 205P11, complete sequence	40	4.4
30	gb\|AC158397.2\| Mus musculus BAC clone RP23-274H19 from chromosom...	40	4.4
31	ref\|XM_467662.1\| Oryza sativa (japonica cultivar-group), mRNA	40	4.4
32	gb\|AY771996.1\| Homo sapiens interleukin 12 receptor, beta 1 (IL1...	40	4.4
33	ref\|XM_428696.1\| PREDICTED: Gallus gallus similar to DEAD (Asp-G...	40	4.4
34	ref\|XM_614019.2\| PREDICTED: Bos taurus similar to meteorin, glia...	40	4.4
35	emb\|Y18000.1\|HSAY18000 Homo sapiens NF2 gene	40	4.4
36	gb\|CP000283.1\| Rhodopseudomonas palustris BisB5, complete genome	40	4.4
37	emb\|BX640440.1\| Bordetella bronchiseptica strain RB50, complete ...	40	4.4
38	emb\|BX640426.1\| Bordetella parapertussis strain 12822, complete ...	40	4.4
39	emb\|AJ580823.1\|LCO580823 Lotus corniculatus var. japonicus ORF1,...	40	4.4
40	gb\|AC004882.3\| Homo sapiens PAC clone RP1-76B20 from 22, complet...	40	4.4
41	gb\|AC020904.7\| Homo sapiens chromosome 19 clone CTB-52I2, comple...	40	4.4
42	gb\|AF043491.1\|AF043491 Oryctolagus cuniculus prostaglandin E2 re...	40	4.4
43	gb\|AC005529.7\| Homo sapiens chromosome 22 clone bk256d12 map 22q...	40	4.4
44	gb\|AE010299.1\| Methanosarcina acetivorans str. C2A, complete genome	40	4.4
45	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.4
46	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.4
47	gb\|AC138982.2\| Homo sapiens chromosome 5 clone RP13-284O6, compl...	40	4.4
48	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	4.4
49	gb\|CP000157.1\| Erythrobacter litoralis HTCC2594, complete genome	40	4.4
50	ref\|XM_236613.3\| PREDICTED: Rattus norvegicus similar to hypothe...	40	4.4
51	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	4.4
52	dbj\|AP004880.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.4
53	dbj\|AP003935.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.4
54	emb\|X89531.1\|EV1VP2GEN Echovirus 1 DNA for 5'UTR and VP2 capsid ...	40	4.4
55	dbj\|AK120606.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	4.4
56	dbj\|AK065325.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	4.4
57	dbj\|AP005666.1\| Lotus japonicus genomic DNA, chromosome 3, clone...	40	4.4
58	dbj\|AB092808.1\| Lotus japonicus gene for hypothetical proteins, ...	40	4.4

>ref|NM_195204.1| Oryza sativa (japonica cultivar-group) putative proton pump
           (OSJNBa0029P16.14), mRNA
          Length = 2352

 Score =  174 bits (88), Expect = 1e-40
 Identities = 144/163 (88%)
 Strand = Plus / Plus

                                                                       
Query: 137 cgcgcagcggagggggctgctgcccctcgatggatctgatgcggtcggaggcgatgcagc 196
           ||||| |||| || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5   cgcgcggcggcggcgggtgctgcccgtcgatggatctgatgcggtcggaggcgatgcagc 64

                                                                       
Query: 197 tcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccacctcggcgatc 256
           |  |||||||||| |||||  | |||||||||||||||||||||||| |||||||||| |
Sbjct: 65  tggtgcaggtcatcatcccggcggagtccgcgcacctcgccgtctcctacctcggcgacc 124

                                                      
Query: 257 tgggcctcatccagttcanagacctcaacgcagacaaaagccc 299
           | |||||| ||||||||| |||||| || || |||||||||||
Sbjct: 125 tcggcctcctccagttcaaagaccttaatgccgacaaaagccc 167

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>dbj|AK119298.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E09, full
           insert sequence
          Length = 3025

 Score =  172 bits (87), Expect = 5e-40
 Identities = 172/200 (86%), Gaps = 3/200 (1%)
 Strand = Plus / Plus

                                                                       
Query: 130 gccatggcgcgcagcggagggggc---tgctgcccctcgatggatctgatgcggtcggag 186
           |||||||||||| |||| || |||   ||||||||  |||||||||||||||||||||||
Sbjct: 192 gccatggcgcgcggcgggggcggcgggtgctgcccgccgatggatctgatgcggtcggag 251

                                                                       
Query: 187 gcgatgcagctcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccac 246
           |||||||||||  |||||||||| |||||||| ||||| ||||||||| |||||||| ||
Sbjct: 252 gcgatgcagctggtgcaggtcatcatccccacggagtcggcgcacctcaccgtctcctac 311

                                                                       
Query: 247 ctcggcgatctgggcctcatccagttcanagacctcaacgcagacaaaagcccgtttcaa 306
           |||||||| || |||||| ||||||| | |||||| ||||||||||| || || ||||||
Sbjct: 312 ctcggcgaactcggcctcctccagttgaaagaccttaacgcagacaagagtccttttcaa 371

                               
Query: 307 cgcacctacgctgcacagat 326
           || || || ||||| |||||
Sbjct: 372 cgaacatatgctgcccagat 391

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>dbj|AK101151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027C12, full
           insert sequence
          Length = 3018

 Score =  172 bits (87), Expect = 5e-40
 Identities = 172/200 (86%), Gaps = 3/200 (1%)
 Strand = Plus / Plus

                                                                       
Query: 130 gccatggcgcgcagcggagggggc---tgctgcccctcgatggatctgatgcggtcggag 186
           |||||||||||| |||| || |||   ||||||||  |||||||||||||||||||||||
Sbjct: 185 gccatggcgcgcggcgggggcggcgggtgctgcccgccgatggatctgatgcggtcggag 244

                                                                       
Query: 187 gcgatgcagctcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccac 246
           |||||||||||  |||||||||| |||||||| ||||| ||||||||| |||||||| ||
Sbjct: 245 gcgatgcagctggtgcaggtcatcatccccacggagtcggcgcacctcaccgtctcctac 304

                                                                       
Query: 247 ctcggcgatctgggcctcatccagttcanagacctcaacgcagacaaaagcccgtttcaa 306
           |||||||| || |||||| ||||||| | |||||| ||||||||||| || || ||||||
Sbjct: 305 ctcggcgaactcggcctcctccagttgaaagaccttaacgcagacaagagtccttttcaa 364

                               
Query: 307 cgcacctacgctgcacagat 326
           || || || ||||| |||||
Sbjct: 365 cgaacatatgctgcccagat 384

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>gb|AC093568.2| Oryza sativa chromosome 10 clone OSJNBa0029P16, complete sequence
          Length = 173644

 Score =  159 bits (80), Expect = 7e-36
 Identities = 127/143 (88%)
 Strand = Plus / Minus

                                                                          
Query: 137    cgcgcagcggagggggctgctgcccctcgatggatctgatgcggtcggaggcgatgcagc 196
              ||||| |||| || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 112066 cgcgcggcggcggcgggtgctgcccgtcgatggatctgatgcggtcggaggcgatgcagc 112007

                                                                          
Query: 197    tcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccacctcggcgatc 256
              |  |||||||||| |||||  | |||||||||||||||||||||||| |||||||||| |
Sbjct: 112006 tggtgcaggtcatcatcccggcggagtccgcgcacctcgccgtctcctacctcggcgacc 111947

                                     
Query: 257    tgggcctcatccagttcanagac 279
              | |||||| ||||||||| ||||
Sbjct: 111946 tcggcctcctccagttcaaagac 111924

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score =  159 bits (80), Expect = 7e-36
 Identities = 127/143 (88%)
 Strand = Plus / Plus

                                                                           
Query: 137     cgcgcagcggagggggctgctgcccctcgatggatctgatgcggtcggaggcgatgcagc 196
               ||||| |||| || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5431582 cgcgcggcggcggcgggtgctgcccgtcgatggatctgatgcggtcggaggcgatgcagc 5431641

                                                                           
Query: 197     tcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccacctcggcgatc 256
               |  |||||||||| |||||  | |||||||||||||||||||||||| |||||||||| |
Sbjct: 5431642 tggtgcaggtcatcatcccggcggagtccgcgcacctcgccgtctcctacctcggcgacc 5431701

                                      
Query: 257     tgggcctcatccagttcanagac 279
               | |||||| ||||||||| ||||
Sbjct: 5431702 tcggcctcctccagttcaaagac 5431724

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  159 bits (80), Expect = 7e-36
 Identities = 127/143 (88%)
 Strand = Plus / Plus

                                                                           
Query: 137     cgcgcagcggagggggctgctgcccctcgatggatctgatgcggtcggaggcgatgcagc 196
               ||||| |||| || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5432369 cgcgcggcggcggcgggtgctgcccgtcgatggatctgatgcggtcggaggcgatgcagc 5432428

                                                                           
Query: 197     tcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccacctcggcgatc 256
               |  |||||||||| |||||  | |||||||||||||||||||||||| |||||||||| |
Sbjct: 5432429 tggtgcaggtcatcatcccggcggagtccgcgcacctcgccgtctcctacctcggcgacc 5432488

                                      
Query: 257     tgggcctcatccagttcanagac 279
               | |||||| ||||||||| ||||
Sbjct: 5432489 tcggcctcctccagttcaaagac 5432511

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  143 bits (72), Expect = 4e-31
 Identities = 128/146 (87%), Gaps = 3/146 (2%)
 Strand = Plus / Plus

                                                                           
Query: 130     gccatggcgcgcagcggagggggc---tgctgcccctcgatggatctgatgcggtcggag 186
               |||||||||||| |||| || |||   ||||||||  |||||||||||||||||||||||
Sbjct: 7953522 gccatggcgcgcggcgggggcggcgggtgctgcccgccgatggatctgatgcggtcggag 7953581

                                                                           
Query: 187     gcgatgcagctcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccac 246
               |||||||||||  |||||||||| |||||||| ||||| ||||||||| |||||||| ||
Sbjct: 7953582 gcgatgcagctggtgcaggtcatcatccccacggagtcggcgcacctcaccgtctcctac 7953641

                                         
Query: 247     ctcggcgatctgggcctcatccagtt 272
               |||||||| || |||||| |||||||
Sbjct: 7953642 ctcggcgaactcggcctcctccagtt 7953667

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  143 bits (72), Expect = 4e-31
 Identities = 128/146 (87%), Gaps = 3/146 (2%)
 Strand = Plus / Plus

                                                                           
Query: 130     gccatggcgcgcagcggagggggc---tgctgcccctcgatggatctgatgcggtcggag 186
               |||||||||||| |||| || |||   ||||||||  |||||||||||||||||||||||
Sbjct: 7951357 gccatggcgcgcggcgggggcggcgggtgctgcccgccgatggatctgatgcggtcggag 7951416

                                                                           
Query: 187     gcgatgcagctcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccac 246
               |||||||||||  |||||||||| |||||||| ||||| ||||||||| |||||||| ||
Sbjct: 7951417 gcgatgcagctggtgcaggtcatcatccccacggagtcggcgcacctcaccgtctcctac 7951476

                                         
Query: 247     ctcggcgatctgggcctcatccagtt 272
               |||||||| || |||||| |||||||
Sbjct: 7951477 ctcggcgaactcggcctcctccagtt 7951502

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>gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0081I10, complete sequence
          Length = 143298

 Score =  143 bits (72), Expect = 4e-31
 Identities = 128/146 (87%), Gaps = 3/146 (2%)
 Strand = Plus / Plus

                                                                         
Query: 130   gccatggcgcgcagcggagggggc---tgctgcccctcgatggatctgatgcggtcggag 186
             |||||||||||| |||| || |||   ||||||||  |||||||||||||||||||||||
Sbjct: 20885 gccatggcgcgcggcgggggcggcgggtgctgcccgccgatggatctgatgcggtcggag 20944

                                                                         
Query: 187   gcgatgcagctcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccac 246
             |||||||||||  |||||||||| |||||||| ||||| ||||||||| |||||||| ||
Sbjct: 20945 gcgatgcagctggtgcaggtcatcatccccacggagtcggcgcacctcaccgtctcctac 21004

                                       
Query: 247   ctcggcgatctgggcctcatccagtt 272
             |||||||| || |||||| |||||||
Sbjct: 21005 ctcggcgaactcggcctcctccagtt 21030

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>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030J04,
              complete sequence
          Length = 153431

 Score =  143 bits (72), Expect = 4e-31
 Identities = 128/146 (87%), Gaps = 3/146 (2%)
 Strand = Plus / Plus

                                                                          
Query: 130    gccatggcgcgcagcggagggggc---tgctgcccctcgatggatctgatgcggtcggag 186
              |||||||||||| |||| || |||   ||||||||  |||||||||||||||||||||||
Sbjct: 139120 gccatggcgcgcggcgggggcggcgggtgctgcccgccgatggatctgatgcggtcggag 139179

                                                                          
Query: 187    gcgatgcagctcctgcaggtcattatccccaccgagtccgcgcacctcgccgtctcccac 246
              |||||||||||  |||||||||| |||||||| ||||| ||||||||| |||||||| ||
Sbjct: 139180 gcgatgcagctggtgcaggtcatcatccccacggagtcggcgcacctcaccgtctcctac 139239

                                        
Query: 247    ctcggcgatctgggcctcatccagtt 272
              |||||||| || |||||| |||||||
Sbjct: 139240 ctcggcgaactcggcctcctccagtt 139265

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>ref|NM_120068.3| Arabidopsis thaliana ATPase AT4G39080 mRNA, complete cds
          Length = 4147

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 129/163 (79%)
 Strand = Plus / Plus

                                                                       
Query: 164 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 223
           |||||||||||||||| || ||| ||||||| ||  | ||| ||||| | ||||  || |
Sbjct: 122 cgatggatctgatgcgttcagagacgatgcaacttgttcagctcattgttcccatggaat 181

                                                                       
Query: 224 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcanagacctca 283
           | || || ||| |||||||  |||| || ||||| |||||| |||| |||| |||||| |
Sbjct: 182 ctgctcatctcaccgtctcttaccttggagatcttggcctcgtccaattcaaagacctta 241

                                                      
Query: 284 acgcagacaaaagcccgtttcaacgcacctacgctgcacagat 326
           |  |||| || ||||| |||||||| || ||||| ||||||||
Sbjct: 242 attcagagaagagcccatttcaacgtacttacgcagcacagat 284

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>gb|AY060557.1| Arabidopsis thaliana AT4g39080/F19H22_180 mRNA, complete cds
          Length = 2819

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 129/163 (79%)
 Strand = Plus / Plus

                                                                       
Query: 164 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 223
           |||||||||||||||| || ||| ||||||| ||  | ||| ||||| | ||||  || |
Sbjct: 113 cgatggatctgatgcgttcagagacgatgcaacttgttcagctcattgttcccatggaat 172

                                                                       
Query: 224 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcanagacctca 283
           | || || ||| |||||||  |||| || ||||| |||||| |||| |||| |||||| |
Sbjct: 173 ctgctcatctcaccgtctcttaccttggagatcttggcctcgtccaattcaaagacctta 232

                                                      
Query: 284 acgcagacaaaagcccgtttcaacgcacctacgctgcacagat 326
           |  |||| || ||||| |||||||| || ||||| ||||||||
Sbjct: 233 attcagagaagagcccatttcaacgtacttacgcagcacagat 275

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>gb|BT002615.1| Arabidopsis thaliana At4g39080/F19H22_180 mRNA, complete cds
          Length = 2466

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 129/163 (79%)
 Strand = Plus / Plus

                                                                       
Query: 164 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 223
           |||||||||||||||| || ||| ||||||| ||  | ||| ||||| | ||||  || |
Sbjct: 38  cgatggatctgatgcgttcagagacgatgcaacttgttcagctcattgttcccatggaat 97

                                                                       
Query: 224 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcanagacctca 283
           | || || ||| |||||||  |||| || ||||| |||||| |||| |||| |||||| |
Sbjct: 98  ctgctcatctcaccgtctcttaccttggagatcttggcctcgtccaattcaaagacctta 157

                                                      
Query: 284 acgcagacaaaagcccgtttcaacgcacctacgctgcacagat 326
           |  |||| || ||||| |||||||| || ||||| ||||||||
Sbjct: 158 attcagagaagagcccatttcaacgtacttacgcagcacagat 200

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>ref|XM_518361.1| PREDICTED: Pan troglodytes similar to Valyl-tRNA synthetase 2
          (LOC462568), mRNA
          Length = 2136

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 50 ggggccgcgctgctcgccgcccgcc 74
          |||||||||| ||||||||||||||
Sbjct: 76 ggggccgcgcggctcgccgcccgcc 52

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>gb|AF134726.1| Homo sapiens BAC clone 215O12 NG35, NG36, G9A, NG22, G9, HSP70-2,
              HSP70-1, HSP70-HOM, snRNP, G7A, NG37, NG23, and MutSH5
              genes, complete cds
          Length = 180283

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 50     ggggccgcgctgctcgccgcccgcc 74
              |||||||||| ||||||||||||||
Sbjct: 122352 ggggccgcgcggctcgccgcccgcc 122328

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>ref|NM_006295.2| Homo sapiens valyl-tRNA synthetase (VARS), mRNA
          Length = 4308

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 50  ggggccgcgctgctcgccgcccgcc 74
           |||||||||| ||||||||||||||
Sbjct: 115 ggggccgcgcggctcgccgcccgcc 91

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>emb|AL929592.8| Human DNA sequence from clone DAQB-147D11 on chromosome 6 Contains
            the 5' end of the VARS2 gene for valyl-tRNA synthetase 2,
            the LSM2 gene for the LSM2 homolog, U6 small nuclear RNA
            associated (S. cerevisiae) factor, the HSPA1L gene for
            the heat shock 10kDa protein 1-like factor, the HSPA1A
            gene for the heat shock 70kDa protein 1A, the HSPA1B gene
            for the heat shock 70kDa protein 1B, the C6orf48 gene for
            chromosome 6 open reading frame 48, and 4 CpG islands,
            complete sequence
          Length = 59836

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 50   ggggccgcgctgctcgccgcccgcc 74
            |||||||||| ||||||||||||||
Sbjct: 7637 ggggccgcgcggctcgccgcccgcc 7661

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>emb|AL671762.10| Human DNA sequence from clone XXbac-254B15 on chromosome 6 contains
            the 5' end of the VARS2 gene for valyl-tRNA synthetase 2,
            the gene for  chromosome 6 open reading frame 28, the
            HSPA1L gene for heat shock 70kDa protein 1-like, the
            HSPA1A gene for heat shock 70kDa protein 1A, the HSPA1B
            gene for heat shock 70kDa protein 1B, the gene for
            chromosome 6 open reading frame 48, the NEU1 gene for
            sialidase 1 (lysosomal sialidase), the gene forchromosome
            6 open reading frame 29, the gene for  HLA-B associated
            transcript 8, the gene for chromosome 6 open reading
            frame 46 and eight CpG islands, complete sequence
          Length = 113582

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 50   ggggccgcgctgctcgccgcccgcc 74
            |||||||||| ||||||||||||||
Sbjct: 3669 ggggccgcgcggctcgccgcccgcc 3693

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>emb|AL662834.8| Human DNA sequence from clone XXbac-40G17 on chromosome 6 contains the
             MSH5 gene for mutS homolog 5 (e. coli), the gene for NG23
             protein, the gene for chromosome 6 open reading frame 27,
             the VARS2 gene for valyl-tRNA synthetase 2, the gene for
             chromosome 6 open reading frame 28, the HSPA1L gene for
             heat shock 70kDa protein 1-like, the HSPA1A gene for heat
             shock 70kDa protein 1A, the HSPA1B gene for heat shock
             70kDa protein 1B, the gene for chromosome 6 open reading
             frame 48, the NEU1 gene for sialidase 1 (lysosomal
             sialidase), the gene for chromosome 6 open reading frame
             29, the BAT8 gene for HLA-B associated transcript 8, the
             gene for chromosome 6 open reading frame 46 and nine CpG
             islands, complete sequence
          Length = 179894

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 50    ggggccgcgctgctcgccgcccgcc 74
             |||||||||| ||||||||||||||
Sbjct: 59695 ggggccgcgcggctcgccgcccgcc 59719

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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 114    cgccgcgggcctgcacgccat 134
              |||||||||||||||||||||
Sbjct: 158710 cgccgcgggcctgcacgccat 158730

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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 55     cgcgctgctcgccgcccgcccatcc 79
              |||| ||||||||||||||||||||
Sbjct: 938592 cgcgttgctcgccgcccgcccatcc 938616

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>emb|CR925765.2| Human DNA sequence from clone DADB-149K5 on chromosome 6, complete
             sequence
          Length = 57997

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 50    ggggccgcgctgctcgccgcccgcc 74
             |||||||||| ||||||||||||||
Sbjct: 44898 ggggccgcgcggctcgccgcccgcc 44922

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>emb|CR759915.6| Human DNA sequence from clone DAAP-21F2 on chromosome 6, complete
             sequence
          Length = 85491

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 50    ggggccgcgctgctcgccgcccgcc 74
             |||||||||| ||||||||||||||
Sbjct: 40866 ggggccgcgcggctcgccgcccgcc 40890

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>emb|CR759787.4| Human DNA sequence from clone DAMC-117B11 on chromosome 6, complete
              sequence
          Length = 113650

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 50     ggggccgcgctgctcgccgcccgcc 74
              |||||||||| ||||||||||||||
Sbjct: 102447 ggggccgcgcggctcgccgcccgcc 102471

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>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 50     ggggccgcgctgctcgccgcccgcc 74
              |||||||||| ||||||||||||||
Sbjct: 148199 ggggccgcgcggctcgccgcccgcc 148175

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>emb|AJ438978.1|MCR438978 Mesembryanthemum crystallinum mRNA for putative vacuolar ATPase
           subunit 100 kDa subunit (vpha-a gene)
          Length = 2783

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 166 atggatctgatgcggtcggaggcgatgca 194
           |||||||||||||| |||||| |||||||
Sbjct: 101 atggatctgatgcgatcggagccgatgca 129

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>emb|AL935270.6| Mouse DNA sequence from clone RP23-391A14 on chromosome 2, complete
             sequence
          Length = 127274

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     cctctcgccccctccctgctc 29
             |||||||||||||||||||||
Sbjct: 40979 cctctcgccccctccctgctc 40959

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>emb|AL132713.11|HSDJ71I17 Human DNA sequence from clone RP1-71I17 on chromosome 6p21.2-22.1,
             complete sequence
          Length = 163682

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 50    ggggccgcgctgctcgccgcccgcc 74
             |||||||||| ||||||||||||||
Sbjct: 15914 ggggccgcgcggctcgccgcccgcc 15890

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>gb|AC098644.4| Takifugu rubripes clone 205P11, complete sequence
          Length = 89481

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   gcagacaaaagcccgtttca 305
             ||||||||||||||||||||
Sbjct: 65957 gcagacaaaagcccgtttca 65976

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>gb|AC158397.2| Mus musculus BAC clone RP23-274H19 from chromosome 16, complete sequence
          Length = 197843

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 48     tcggggccgcgctgctcgccgccc 71
              |||||||||||| |||||||||||
Sbjct: 109278 tcggggccgcgccgctcgccgccc 109301

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>ref|XM_467662.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1702

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   ctcatcctcctctcgccccc 20
           ||||||||||||||||||||
Sbjct: 471 ctcatcctcctctcgccccc 490

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>gb|AY771996.1| Homo sapiens interleukin 12 receptor, beta 1 (IL12RB1) gene, complete
            cds
          Length = 30584

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 9    cctctcgccccctccctgct 28
            ||||||||||||||||||||
Sbjct: 3294 cctctcgccccctccctgct 3275

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>ref|XM_428696.1| PREDICTED: Gallus gallus similar to DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 41 (LOC431146), partial mRNA
          Length = 484

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 54  ccgcgctgctcgccgcccgc 73
           ||||||||||||||||||||
Sbjct: 129 ccgcgctgctcgccgcccgc 110

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>ref|XM_614019.2| PREDICTED: Bos taurus similar to meteorin, glial cell differentiation
            regulator-like (LOC534297), mRNA
          Length = 2750

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 65   gccgcccgcccatccccgcc 84
            ||||||||||||||||||||
Sbjct: 1200 gccgcccgcccatccccgcc 1181

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>emb|Y18000.1|HSAY18000 Homo sapiens NF2 gene
          Length = 126138

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     ccgcgctgctcgccgcccgc 73
              ||||||||||||||||||||
Sbjct: 124587 ccgcgctgctcgccgcccgc 124568

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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 53      gccgcgctgctcgccgcccg 72
               ||||||||||||||||||||
Sbjct: 1159852 gccgcgctgctcgccgcccg 1159833

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>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16
          Length = 349497

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 121    ggcctgcacgccatggcgcgcagc 144
              ||||||||||| ||||||||||||
Sbjct: 268779 ggcctgcacgcgatggcgcgcagc 268802

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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   ggcctgcacgccatggcgcgcagc 144
             ||||||||||| ||||||||||||
Sbjct: 34454 ggcctgcacgcgatggcgcgcagc 34477

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>emb|AJ580823.1|LCO580823 Lotus corniculatus var. japonicus ORF1, ORF2, ORF3 and genes for
             vacuolar proton-ATPase subunit-like protein, papain-like
             cysteine proteinase-like protein 1 and papain-like
             cysteine proteinase-like protein 2
          Length = 46563

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 91/115 (79%)
 Strand = Plus / Plus

                                                                         
Query: 164   cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 223
             ||||||||||| | || || ||| ||||||| ||| | ||  |||| ||||||| ||| |
Sbjct: 13091 cgatggatctgttccgttccgagccgatgcaactcgttcaactcatcatccccatcgaat 13150

                                                                    
Query: 224   ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcanaga 278
             | || |||| | | |||||| |||||||||| || |||||| | ||||||| |||
Sbjct: 13151 ctgctcaccgcactgtctcctacctcggcgaccttggcctccttcagttcaaaga 13205

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>gb|AC004882.3| Homo sapiens PAC clone RP1-76B20 from 22, complete sequence
          Length = 171682

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    ccgcgctgctcgccgcccgc 73
             ||||||||||||||||||||
Sbjct: 66710 ccgcgctgctcgccgcccgc 66691

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>gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, complete sequence
          Length = 148824

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      cctctcgccccctccctgct 28
              ||||||||||||||||||||
Sbjct: 131304 cctctcgccccctccctgct 131323

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>gb|AF043491.1|AF043491 Oryctolagus cuniculus prostaglandin E2 receptor subtype EP1 mRNA,
          partial cds
          Length = 781

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 52 ggccgcgctgctcgccgccc 71
          ||||||||||||||||||||
Sbjct: 67 ggccgcgctgctcgccgccc 86

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>gb|AC005529.7| Homo sapiens chromosome 22 clone bk256d12 map 22q12, complete sequence
          Length = 318488

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     ccgcgctgctcgccgcccgc 73
              ||||||||||||||||||||
Sbjct: 247967 ccgcgctgctcgccgcccgc 247948

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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 281     tcaacgcagacaaaagcccg 300
               ||||||||||||||||||||
Sbjct: 2733381 tcaacgcagacaaaagcccg 2733362

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 6        cctcctctcgccccctccct 25
                ||||||||||||||||||||
Sbjct: 28360074 cctcctctcgccccctccct 28360055

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        ctcatcctcctctcgccccc 20
                ||||||||||||||||||||
Sbjct: 30688178 ctcatcctcctctcgccccc 30688197

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>gb|AC138982.2| Homo sapiens chromosome 5 clone RP13-284O6, complete sequence
          Length = 110563

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     cctcctctcgccccctccct 25
             ||||||||||||||||||||
Sbjct: 78475 cctcctctcgccccctccct 78456

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 47      atcggggccgcgctgctcgccgcc 70
               |||||| |||||||||||||||||
Sbjct: 8444514 atcgggtccgcgctgctcgccgcc 8444491

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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 52      ggccgcgctgctcgccgccc 71
               ||||||||||||||||||||
Sbjct: 2006866 ggccgcgctgctcgccgccc 2006885

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>ref|XM_236613.3| PREDICTED: Rattus norvegicus similar to hypothetical protein
           (predicted) (LOC315988), mRNA
          Length = 2628

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  gcgctgctcgccgcccgccc 75
           ||||||||||||||||||||
Sbjct: 115 gcgctgctcgccgcccgccc 96

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 51      gggccgcgctgctcgccgcc 70
               ||||||||||||||||||||
Sbjct: 4225959 gggccgcgctgctcgccgcc 4225940

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>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0487D09
          Length = 161531

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ctcatcctcctctcgccccc 20
             ||||||||||||||||||||
Sbjct: 28325 ctcatcctcctctcgccccc 28344

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>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0661G04
          Length = 157292

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     cctcctctcgccccctccct 25
             ||||||||||||||||||||
Sbjct: 72652 cctcctctcgccccctccct 72633

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>emb|X89531.1|EV1VP2GEN Echovirus 1 DNA for 5'UTR and VP2 capsid protein gene
          Length = 1412

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  cgcgggcctgcacgccatgg 136
            ||||||||||||||||||||
Sbjct: 1137 cgcgggcctgcacgccatgg 1118

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>dbj|AK120606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151A19, full
           insert sequence
          Length = 1702

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   ctcatcctcctctcgccccc 20
           ||||||||||||||||||||
Sbjct: 471 ctcatcctcctctcgccccc 490

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>dbj|AK065325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P24, full
           insert sequence
          Length = 1596

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 tcgccgtctcccacctcggc 252
           ||||||||||||||||||||
Sbjct: 200 tcgccgtctcccacctcggc 181

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>dbj|AP005666.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT09E01, TM0258b,
             complete sequence
          Length = 46491

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 91/115 (79%)
 Strand = Plus / Plus

                                                                         
Query: 164   cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 223
             ||||||||||| | || || ||| ||||||| ||| | ||  |||| ||||||| ||| |
Sbjct: 13157 cgatggatctgttccgttccgagccgatgcaactcgttcaactcatcatccccatcgaat 13216

                                                                    
Query: 224   ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcanaga 278
             | || |||| | | |||||| |||||||||| || |||||| | ||||||| |||
Sbjct: 13217 ctgctcaccgcactgtctcctacctcggcgaccttggcctccttcagttcaaaga 13271

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>dbj|AB092808.1| Lotus japonicus gene for hypothetical proteins, complete and
           partial cds, clone:BAC259.12D-1
          Length = 32644

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 91/115 (79%)
 Strand = Plus / Plus

                                                                       
Query: 164 cgatggatctgatgcggtcggaggcgatgcagctcctgcaggtcattatccccaccgagt 223
           ||||||||||| | || || ||| ||||||| ||| | ||  |||| ||||||| ||| |
Sbjct: 267 cgatggatctgttccgttccgagccgatgcaactcgttcaactcatcatccccatcgaat 326

                                                                  
Query: 224 ccgcgcacctcgccgtctcccacctcggcgatctgggcctcatccagttcanaga 278
           | || |||| | | |||||| |||||||||| || |||||| | ||||||| |||
Sbjct: 327 ctgctcaccgcactgtctcctacctcggcgaccttggcctccttcagttcaaaga 381


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,958,568
Number of Sequences: 3902068
Number of extensions: 1958568
Number of successful extensions: 45409
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 44500
Number of HSP's gapped (non-prelim): 912
length of query: 333
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 311
effective length of database: 17,147,199,772
effective search space: 5332779129092
effective search space used: 5332779129092
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result