ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR678358.2|CNS0FMDK Tetraodon nigroviridis full-length cDNA 42 0.17
2emb|CR676869.1|CNS0FL8H Tetraodon nigroviridis full-length cDNA 42 0.17
3emb|CR671056.2|CNS0FGRA Tetraodon nigroviridis full-length cDNA 42 0.17
4emb|CR663391.2|CNS0FAUD Tetraodon nigroviridis full-length cDNA 42 0.17
5emb|CR649008.2|CNS0EZQU Tetraodon nigroviridis full-length cDNA 42 0.17
6emb|CR648727.2|CNS0EZJ1 Tetraodon nigroviridis full-length cDNA 42 0.17
7emb|CR642216.2|CNS0EUI6 Tetraodon nigroviridis full-length cDNA 42 0.17
8ref|XM_470851.1| Oryza sativa (japonica cultivar-group), mRNA 38 2.7
9gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome... 38 2.7
10gb|AC117657.11| Mus musculus chromosome 15, clone RP23-299O23, c... 38 2.7
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 2.7
12gb|AC068467.7| Homo sapiens chromosome 8, clone RP11-643F5, comp... 38 2.7
13emb|AJ457974.1|CFA457974 Canis familiaris partial pax3 gene for ... 38 2.7
14gb|AC097279.5| Oryza sativa chromosome 3 BAC OSJNBa0093I13 genom... 38 2.7
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.7
16emb|AL671895.9| Mouse DNA sequence from clone RP23-342E4 on chro... 38 2.7

>emb|CR678358.2|CNS0FMDK Tetraodon nigroviridis full-length cDNA
          Length = 1104

 Score = 42.1 bits (21), Expect = 0.17
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 47  atgtctctgctgctgcgccgt 67
           |||||||||||||||||||||
Sbjct: 313 atgtctctgctgctgcgccgt 333



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>emb|CR676869.1|CNS0FL8H Tetraodon nigroviridis full-length cDNA
          Length = 1326

 Score = 42.1 bits (21), Expect = 0.17
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 47  atgtctctgctgctgcgccgt 67
           |||||||||||||||||||||
Sbjct: 718 atgtctctgctgctgcgccgt 738



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>emb|CR671056.2|CNS0FGRA Tetraodon nigroviridis full-length cDNA
          Length = 1144

 Score = 42.1 bits (21), Expect = 0.17
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 47  atgtctctgctgctgcgccgt 67
           |||||||||||||||||||||
Sbjct: 339 atgtctctgctgctgcgccgt 359



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>emb|CR663391.2|CNS0FAUD Tetraodon nigroviridis full-length cDNA
          Length = 1343

 Score = 42.1 bits (21), Expect = 0.17
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 47  atgtctctgctgctgcgccgt 67
           |||||||||||||||||||||
Sbjct: 724 atgtctctgctgctgcgccgt 744



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>emb|CR649008.2|CNS0EZQU Tetraodon nigroviridis full-length cDNA
          Length = 1503

 Score = 42.1 bits (21), Expect = 0.17
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 47  atgtctctgctgctgcgccgt 67
           |||||||||||||||||||||
Sbjct: 940 atgtctctgctgctgcgccgt 960



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>emb|CR648727.2|CNS0EZJ1 Tetraodon nigroviridis full-length cDNA
          Length = 1448

 Score = 42.1 bits (21), Expect = 0.17
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 47  atgtctctgctgctgcgccgt 67
           |||||||||||||||||||||
Sbjct: 636 atgtctctgctgctgcgccgt 656



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>emb|CR642216.2|CNS0EUI6 Tetraodon nigroviridis full-length cDNA
          Length = 1270

 Score = 42.1 bits (21), Expect = 0.17
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 47  atgtctctgctgctgcgccgt 67
           |||||||||||||||||||||
Sbjct: 778 atgtctctgctgctgcgccgt 798



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>ref|XM_470851.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 414

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 48  tgtctctgctgctgcgccg 66
           |||||||||||||||||||
Sbjct: 140 tgtctctgctgctgcgccg 122



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>gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBb0004M10, complete sequence
          Length = 152423

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 48   tgtctctgctgctgcgccg 66
            |||||||||||||||||||
Sbjct: 1803 tgtctctgctgctgcgccg 1785



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>gb|AC117657.11| Mus musculus chromosome 15, clone RP23-299O23, complete sequence
          Length = 198005

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 43     tctcatgtctctgctgctg 61
              |||||||||||||||||||
Sbjct: 146161 tctcatgtctctgctgctg 146179



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 48       tgtctctgctgctgcgccg 66
                |||||||||||||||||||
Sbjct: 15740003 tgtctctgctgctgcgccg 15739985



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>gb|AC068467.7| Homo sapiens chromosome 8, clone RP11-643F5, complete sequence
          Length = 185895

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    ctcatgtctctgctgctgc 62
             |||||||||||||||||||
Sbjct: 22625 ctcatgtctctgctgctgc 22607



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>emb|AJ457974.1|CFA457974 Canis familiaris partial pax3 gene for paired-box 3 protein, exons
           1-4
          Length = 5820

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 7   cccccggggactccgcgcc 25
           |||||||||||||||||||
Sbjct: 170 cccccggggactccgcgcc 152



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>gb|AC097279.5| Oryza sativa chromosome 3 BAC OSJNBa0093I13 genomic sequence, complete
              sequence
          Length = 178748

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 48     tgtctctgctgctgcgccg 66
              |||||||||||||||||||
Sbjct: 149957 tgtctctgctgctgcgccg 149939



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 48       tgtctctgctgctgcgccg 66
                |||||||||||||||||||
Sbjct: 15734537 tgtctctgctgctgcgccg 15734519



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>emb|AL671895.9| Mouse DNA sequence from clone RP23-342E4 on chromosome 4, complete
              sequence
          Length = 200368

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 38     gggaatctcatgtctctgc 56
              |||||||||||||||||||
Sbjct: 133948 gggaatctcatgtctctgc 133966


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 563,889
Number of Sequences: 3902068
Number of extensions: 563889
Number of successful extensions: 41348
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41321
Number of HSP's gapped (non-prelim): 27
length of query: 69
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 48
effective length of database: 17,151,101,840
effective search space: 823252888320
effective search space used: 823252888320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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