ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl11b05 |
|---|---|
| Clone Library Name | barley_pub |
>SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1108 Score = 83.6 bits (205), Expect = 2e-16 Identities = 34/44 (77%), Positives = 40/44 (90%) Frame = +3 Query: 342 ADDENPEDFIDPETPSGQKKSLAPQMAKQYSPSTVEKSWYAWWE 473 A +ENPEDF+DPETP G++K L+ QMAKQYSP+TVEKSWYAWWE Sbjct: 111 ASEENPEDFVDPETPLGERKRLSSQMAKQYSPATVEKSWYAWWE 154
>SYV_FUGRU (P49696) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1217 Score = 44.7 bits (104), Expect = 1e-04 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = +3 Query: 372 DPETPSGQKKSLAPQMAKQYSPSTVEKSWYAWWE 473 D TPSG+KK + + YSP VE +WY WWE Sbjct: 230 DIPTPSGEKKDVVSPLPDSYSPQYVEAAWYPWWE 263
>SYV_RAT (Q04462) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1264 Score = 43.9 bits (102), Expect = 2e-04 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = +3 Query: 372 DPETPSGQKKSLAPQMAKQYSPSTVEKSWYAWWE 473 D TP G+KK ++ M YSP VE +WY WWE Sbjct: 281 DLPTPPGEKKDVSGTMPDSYSPQYVEAAWYPWWE 314
>SYV_MOUSE (Q9Z1Q9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1263 Score = 43.9 bits (102), Expect = 2e-04 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = +3 Query: 372 DPETPSGQKKSLAPQMAKQYSPSTVEKSWYAWWE 473 D TP G+KK ++ M YSP VE +WY WWE Sbjct: 280 DLPTPPGEKKDVSGAMPDSYSPQYVEAAWYPWWE 313
>SYV_HUMAN (P26640) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1264 Score = 43.5 bits (101), Expect = 3e-04 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = +3 Query: 372 DPETPSGQKKSLAPQMAKQYSPSTVEKSWYAWWE 473 D TP G+KK ++ M YSP VE +WY WWE Sbjct: 281 DLPTPPGEKKDVSGPMPDSYSPRYVEAAWYPWWE 314
>SYV_YEAST (P07806) Valyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.9) (Valine--tRNA ligase) (ValRS) Length = 1104 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 3/39 (7%) Frame = +3 Query: 363 DFIDPETPSGQKK---SLAPQMAKQYSPSTVEKSWYAWW 470 +FID P G+KK SL K Y+P+ VE SWY WW Sbjct: 124 EFIDKTVP-GEKKILVSLDDPALKAYNPANVESSWYDWW 161
>SYV_NEUCR (P28350) Valyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.9) (Valine--tRNA ligase) (ValRS) Length = 1093 Score = 37.4 bits (85), Expect = 0.020 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Frame = +3 Query: 372 DPETPSGQKK---SLAPQMAKQYSPSTVEKSWYAWWE 473 + TP+G+KK S Y+PS VE +WY WWE Sbjct: 118 EDSTPAGEKKVIQSFEHPHFSAYNPSAVEAAWYQWWE 154
>SYV_SCHPO (O75005) Probable valyl-tRNA synthetase, mitochondrial precursor| (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS) Length = 980 Score = 34.7 bits (78), Expect = 0.13 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +3 Query: 363 DFIDPETPSGQK--KSLAPQMAKQYSPSTVEKSWYAWW 470 ++++ TP +K + L K Y+P VE +WY WW Sbjct: 73 EYVEKTTPGEKKVLQDLDSPALKSYNPKAVESAWYDWW 110
>SYV_DEHSC (Q3ZZG9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 32.3 bits (72), Expect = 0.64 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +3 Query: 411 PQMAKQYSPSTVEKSWYAWW 470 P+MAK Y + VEK WY +W Sbjct: 8 PEMAKAYEAAEVEKKWYQYW 27
>SYV_DEHE1 (Q3Z9C5) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 32.3 bits (72), Expect = 0.64 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +3 Query: 411 PQMAKQYSPSTVEKSWYAWW 470 P+MAK Y + VEK WY +W Sbjct: 8 PEMAKAYEAAEVEKKWYQYW 27
>SYV_THIDA (Q3SL86) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 912 Score = 31.6 bits (70), Expect = 1.1 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +3 Query: 414 QMAKQYSPSTVEKSWYAWWE 473 ++AK + P+ +EK WYA WE Sbjct: 2 ELAKSFEPAEIEKRWYARWE 21
>SYV_GEOSL (Q74BJ6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 887 Score = 30.8 bits (68), Expect = 1.9 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +3 Query: 414 QMAKQYSPSTVEKSWYAWWE 473 ++AK Y P+ VE+ WY WE Sbjct: 5 ELAKVYEPTAVERKWYETWE 24
>SYV_CHRVO (Q7NUM8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 939 Score = 30.4 bits (67), Expect = 2.4 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 414 QMAKQYSPSTVEKSWYAWWE 473 Q+AK Y P +E+ WY WE Sbjct: 3 QLAKSYEPGDLERRWYQHWE 22
>SYV_BDEBA (Q6MQK8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 894 Score = 29.3 bits (64), Expect = 5.4 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +3 Query: 405 LAPQMAKQYSPSTVEKSWYAWWE 473 ++ Q++ +Y+P+ VE Y WWE Sbjct: 3 MSEQLSDRYNPADVESRTYEWWE 25
>SYV_FUSNN (Q8RHK3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 887 Score = 29.3 bits (64), Expect = 5.4 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = +3 Query: 414 QMAKQYSPSTVEKSWYAWWE 473 ++ K YSP+ +E+ WY WE Sbjct: 3 ELDKNYSPNEIEEKWYKIWE 22
>SYV_BACSK (Q5WEQ4) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 28.9 bits (63), Expect = 7.1 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +3 Query: 417 MAKQYSPSTVEKSWYAWW 470 M +Y PS EK WY +W Sbjct: 7 MPTKYDPSATEKKWYTYW 24
>SYV_CARHZ (Q3AF87) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 878 Score = 28.9 bits (63), Expect = 7.1 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 429 YSPSTVEKSWYAWWE 473 YSP VE+ WY +WE Sbjct: 9 YSPQEVERKWYKYWE 23
>SYV_THEMA (Q9X2D7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 865 Score = 28.5 bits (62), Expect = 9.2 Identities = 7/20 (35%), Positives = 15/20 (75%) Frame = +3 Query: 414 QMAKQYSPSTVEKSWYAWWE 473 +++ +Y+P+ +E WY +WE Sbjct: 3 ELSTRYNPAEIETKWYRYWE 22
>SYV_PSEU2 (Q4ZXI0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 28.5 bits (62), Expect = 9.2 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +3 Query: 417 MAKQYSPSTVEKSWYAWWE 473 M K Y P +E SWY WE Sbjct: 1 MDKTYQPHAIETSWYQTWE 19
>SYV_PSESM (Q887M3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 28.5 bits (62), Expect = 9.2 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +3 Query: 417 MAKQYSPSTVEKSWYAWWE 473 M K Y P +E SWY WE Sbjct: 1 MDKTYQPHAIETSWYQTWE 19
>SYV_PSEF5 (Q4KHT9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 28.5 bits (62), Expect = 9.2 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +3 Query: 417 MAKQYSPSTVEKSWYAWWE 473 M K Y P +E SWY WE Sbjct: 1 MDKTYQPHAIETSWYQTWE 19
>SYV_PSE14 (Q48MF2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 28.5 bits (62), Expect = 9.2 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +3 Query: 417 MAKQYSPSTVEKSWYAWWE 473 M K Y P +E SWY WE Sbjct: 1 MDKTYQPHAIETSWYQTWE 19
>SYV_PELCD (Q3A253) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 899 Score = 28.5 bits (62), Expect = 9.2 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +3 Query: 405 LAPQMAKQYSPSTVEKSWYAWW 470 + P++ K Y P VE WY +W Sbjct: 15 MEPKLPKGYEPHDVEAKWYEFW 36
>SYV_PSEAE (Q9HXH0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 950 Score = 28.5 bits (62), Expect = 9.2 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +3 Query: 417 MAKQYSPSTVEKSWYAWWE 473 M K Y P +E SWY WE Sbjct: 1 MDKTYQPHAIETSWYETWE 19 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,845,124 Number of Sequences: 219361 Number of extensions: 428310 Number of successful extensions: 1606 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1584 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1606 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
