>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 42/95 (44%), Positives = 56/95 (58%), Gaps = 9/95 (9%)
 Frame = +1

Query: 175 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMALRLARRGGV---------DEPFAW 327
           RG VK V SG  +++ G  +   PPE+ I LS + A  LARR  V         DEP+A+
Sbjct: 21  RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80

Query: 328 ESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYL 432
            +REFLRK  +GKEV F ++   P  GRE+G +YL
Sbjct: 81  PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYL 114



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
 Frame = +1

Query: 181 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMALRLARRGGVDE----------PFAWE 330
           KV  V + D +++    K      K+I LS +   RL      D+          P+ +E
Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401

Query: 331 SREFLRKLCVGKEVTFRVDYTAP 399
           +REFLRK  +GK+V   VDY  P
Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424

>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (4SNc-Tudor domain
           protein)
          Length = 897

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 44/107 (41%), Positives = 60/107 (56%), Gaps = 9/107 (8%)
 Frame = +1

Query: 139 IMASNTGASG*LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMALRLARRG----- 303
           + +S   A    RG VK V SG  +++ G  +   PPE+ I LS + A  LARR      
Sbjct: 9   VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68

Query: 304 ----GVDEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYL 432
                 DEP+A+++REF+RK  +GKEV F V+   P  GRE+G VYL
Sbjct: 69  DTKDTPDEPWAFQAREFMRKKVIGKEVCFTVENKTPQ-GREYGMVYL 114



 Score = 35.4 bits (80), Expect = 0.059
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +1

Query: 310 DEPFAWESREFLRKLCVGKEVTFRVDY 390
           D P+ +E+REFLRK  +GK+V   VDY
Sbjct: 397 DIPYMFEAREFLRKKLIGKKVNVTVDY 423

>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (SND p102) (p105
           coactivator)
          Length = 909

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 9/116 (7%)
 Frame = +1

Query: 112 LAAGQSQGAIMASNTGASG*LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMALRL 291
           +A+ QS G+  +         RG VK V SG  +++ G  +   PPE+ I LS + A  L
Sbjct: 1   MASAQSSGS--SGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNL 58

Query: 292 ARRGGV---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYL 432
           ARR            DEP+A+ +REFLRK  +GKEV F ++   P  GRE+G +YL
Sbjct: 59  ARRAAATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYL 113



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +1

Query: 310 DEPFAWESREFLRKLCVGKEVTFRVDYTAP 399
           D P+ +E+REFLRK  +GK+V+  VDY  P
Sbjct: 394 DIPYMFEAREFLRKKLIGKKVSVTVDYIRP 423

>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 15/114 (13%)
 Frame = +1

Query: 136 AIMASNTGASG*------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMALRLAR 297
           A  A ++G+SG        RG VK V SG  +++ G  +   PPE+ I LS + A  LAR
Sbjct: 2   ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61

Query: 298 RGGV---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYL 432
           R            DEP+A+ +REFLRK  +GKEV F ++   P  GRE+G +YL
Sbjct: 62  RAAATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYL 114



 Score = 37.4 bits (85), Expect = 0.016
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 310 DEPFAWESREFLRKLCVGKEVTFRVDYTAP 399
           D P+ +E+REFLRK  +GK+V   VDY  P
Sbjct: 395 DIPYMFEAREFLRKKLIGKKVNVTVDYIRP 424

>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (EBNA2 coactivator
           p100)
          Length = 910

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
 Frame = +1

Query: 175 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMALRLARRGGV---------DEPFAW 327
           RG +K V SG  +++ G  +   PPE+ I LS + A  LARR            DEP+A+
Sbjct: 21  RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80

Query: 328 ESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYL 432
            +REFLRK  +GKEV F ++   P  GRE+G +YL
Sbjct: 81  PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYL 114



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
 Frame = +1

Query: 181 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMALRLARRGGVDE----------PFAWE 330
           KV  V + D +++    K      K+I LS +   RL      D+          P+ +E
Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401

Query: 331 SREFLRKLCVGKEVTFRVDYTAP 399
           +REFLRK  +GK+V   VDY  P
Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424

>VG20_BPT4 (P13334) Structural protein of head (Tail tube protein Gp20)|
          Length = 524

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -1

Query: 429 VDSAKFSPDVRSCVIHSECDLLSYAKFPQKLPAFPSKWLIDS 304
           +D +KFSP +++ ++    D+L++  F +K      +W +DS
Sbjct: 113 LDKSKFSPKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWYVDS 154

>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding|
           protein MBD6)
          Length = 1003

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
 Frame = -2

Query: 350 FLRNSLLSQANGSSTPPRRA-SLRAIRYDRVMDFSGGISALVLPMMRRQSPEVTAFTLPL 174
           FL +SLLS A  +  PP    S    R  R    S   S+ + P  RR     T F L  
Sbjct: 318 FLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLE 377

Query: 173 SH-PEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVWPAG*SLLSRPDPDPN 24
              P+ P      AP   P      LP  +P + + P+  SLL  P P P+
Sbjct: 378 GRGPQTPRRSRPRAPA--PVPQPFSLP--EPSQPILPSVLSLLGLPTPGPS 424

>WBS22_HUMAN (O43709) Putative methyltransferase WBSCR22 (EC 2.1.1.-)|
           (Williams-Beuren syndrome chromosome region 22 protein)
          Length = 281

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 220 MGSTKAEIPPEKSITLSYLMALRLARRGGVDEPFAWESREFLRKLCVGKEVTFRVDYT 393
           +   + E+ P +S+  +    LR++RRG V +  AW   +  R    G+EV     YT
Sbjct: 216 LSENQDEVEPRESVFTNERFPLRMSRRGMVRKSRAWVLEKKERHRRQGREVRPDTQYT 273

>Y38K_CORSE (Q39635) Hypothetical 38.1 kDa protein|
          Length = 338

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 316 PFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVY 429
           PF  E++E L KL VGK +T  + Y     GR  G +Y
Sbjct: 240 PFGKEAKEELIKLVVGKCLTVHI-YEEDRYGRSVGDIY 276

>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 4 (Hyperpolarization-activated
           cation channel 4) (HAC-4)
          Length = 1175

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 115 AAG--QSQGAIMASNTGASG*LRGKVKAVTSGDCLLIMGS 228
           AAG  +S+GA +       G  RG  K+ T+GDC    GS
Sbjct: 66  AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105

>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA|
           regulatory subunit)
          Length = 522

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = -2

Query: 323 ANGSSTPPRRASLRAIRYDRVMDFSGG----ISALVLPMMRRQSPEVTAFTLPLSHPEAP 156
           A G ++P +RASL     D     +GG    +++L +PM   QSP+ T      + P AP
Sbjct: 78  APGLASPTQRASL--FHSDPFAPGAGGGALPVASLAVPMDASQSPDSTPAPATPAAPAAP 135

Query: 155 VFDAMIAPWDWPAASG 108
              A  AP+     SG
Sbjct: 136 A--APAAPFSSLGGSG 149

>RIBD2_BUCAI (P57534) 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC|
           1.1.1.193) (HTP reductase)
          Length = 207

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 390 VIHSECDLLSYAKFPQKLPAFPSKWLIDSTTTSQP*GHKV*QSDGLLW 247
           V + E D  + + FP K+   P + +IDS    QP  H + ++ G +W
Sbjct: 44  VRYKELDKKTLSIFPNKIFQHPIRVIIDSKNRVQP-SHNIIKTKGKIW 90

>LAMB_AERSA (Q44287) Maltoporin precursor (Maltose-inducible porin)|
          Length = 445

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 171 TKGQGEGCDFWGLPSHHGEH--QGRDPAREVHHSVIPYGPKAGSSW 302
           T+G  +   FWG  S +G     G D  R ++H VIP     G+SW
Sbjct: 282 TEGYSKTFAFWGDRSWYGAEAKDGADGFRIINHGVIP----MGNSW 323


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,680,571
Number of Sequences: 219361
Number of extensions: 1266663
Number of successful extensions: 3171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3166
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)