>RNR_MYCGE (P47350) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 725

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 143 LTPLTLVSSSSFSAVWVNHHLNQSKGVRSRTTVVIQNPASYALSDL 280
           L P T++S + FS   VN  LN    +    TV+    A++ LSDL
Sbjct: 374 LYPATIISKNRFSYDQVNKWLNNKSELNCDETVINSLKAAFTLSDL 419

>WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protein-related|
           protein)
          Length = 440

 Score = 25.4 bits (54), Expect(2) = 1.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 196 PPPQPIQGSEEQNHRRHPKPCFLCPLRPP 282
           PPP  + GSE  +  + P P    P  PP
Sbjct: 343 PPPYRMHGSEPPSRGKPPPPPSRTPAGPP 371



 Score = 23.5 bits (49), Expect(2) = 1.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 3   ASTKPHSGTPSLLDNSTPFHPLHLPPN 83
           A   P S TPSLL N  P  P   PP+
Sbjct: 295 APPPPTSATPSLLSNRPP-PPAREPPS 320

>LRP2_HHV1F (P17589) Latency-related protein 2|
          Length = 107

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 15  PHSGTPSLLDNSTPFHP-LHLPPNSLRY 95
           PHS  P L    TP HP  H PP S+++
Sbjct: 30  PHSHAPPLPRTPTPTHPHSHAPPRSIQH 57

>RANB9_HUMAN (Q96S59) Ran-binding protein 9 (RanBP9) (RanBP7) (Ran-binding|
           protein M) (RanBPM) (BPM90) (BPM-L)
          Length = 729

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 190 GEPPPQPIQGSEEQNHRRHPKPCFLCPL 273
           G+PPP P Q  ++Q     P P  L P+
Sbjct: 3   GQPPPPPPQQQQQQQQLSPPPPAALAPV 30

>POLR_TYMVC (P28477) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
 Frame = +1

Query: 16  PTLAHPPSLITA-LPFILSICLPTPFDTLGYQRGSNLIHS*LCSDSTHSRIFVKL*RGLG 192
           P L   P L  A  P  LSI    P D++    GS+L+H  L +  TH     +L     
Sbjct: 677 PQLPATPDLEPAHTPPPLSIPHQDPTDSVDPLMGSHLLHHSLPAPPTHPLPSSQLLPAPL 736

Query: 193 EPPPQ---PIQGSEEQNHRRHPK--PCFLCPLRP-PCYHMPLP 303
              P    P+   EE + RR+P+    FL  LR  P  H+P P
Sbjct: 737 TNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQP 779

>POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
 Frame = +1

Query: 16  PTLAHPPSLITA-LPFILSICLPTPFDTLGYQRGSNLIHS*LCSDSTHSRIFVKL*RGLG 192
           P L   P L  A  P  LSI    P D+     GS+L+H  L +  TH     +L     
Sbjct: 677 PQLPATPDLEPAHTPPPLSIPHQDPTDSADPLMGSHLLHHSLPAPPTHPLPSSQLLPAPL 736

Query: 193 EPPPQ---PIQGSEEQNHRRHPK--PCFLCPLRP-PCYHMPLP 303
              P    P+   EE + RR+P+    FL  LR  P  H+P P
Sbjct: 737 TNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQP 779

>FETUA_SHEEP (P29701) Alpha-2-HS-glycoprotein precursor (Fetuin-A)|
          Length = 364

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 27  TPSLLDNSTPFHPLHLPPNSLRYFRI 104
           TP +   S P  P+HL P  +RYF+I
Sbjct: 339 TPIVGQPSVPGGPVHLCPGRIRYFKI 364


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,236,643
Number of Sequences: 219361
Number of extensions: 967397
Number of successful extensions: 3500
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3494
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)