ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR381573.14| Zebrafish DNA sequence from clone DKEY-23M15 in... 44 0.26
2emb|BX005057.8| Zebrafish DNA sequence from clone DKEY-12L12 in ... 44 0.26
3emb|AL974314.21| Zebrafish DNA sequence from clone DKEY-89P3 in ... 44 0.26
4emb|BX927327.14| Zebrafish DNA sequence from clone CH211-11C15 i... 42 1.0
5gb|AC093851.5| Homo sapiens chromosome 4 clone RP11-499N1, compl... 42 1.0
6emb|BX901878.6| Zebrafish DNA sequence from clone DKEY-11O15 in ... 42 1.0
7emb|BX284112.25| Zebrafish DNA sequence from clone DKEYP-75A7 in... 42 1.0
8gb|AC096713.3| Homo sapiens BAC clone RP11-1J11 from 4, complete... 42 1.0
9gb|AC093382.3| Homo sapiens BAC clone RP11-476D14 from 2, comple... 42 1.0
10emb|BX001038.6| Zebrafish DNA sequence from clone CH211-12M10 in... 42 1.0
11emb|AL845421.9| Zebrafish DNA sequence from clone CH211-199I15 i... 42 1.0
12gb|AC113554.9| Homo sapiens chromosome 17, clone CTD-2501B8, com... 40 4.0
13gb|AC093620.3| Homo sapiens BAC clone RP13-901C16 from 7, comple... 40 4.0
14gb|AC183298.3| Pan troglodytes BAC clone CH251-330I21 from chrom... 40 4.0
15gb|AC009623.6|AC009623 Homo sapiens chromosome 8, clone RP11-219... 40 4.0
16gb|AC061965.16| Homo sapiens chromosome 15, clone RP11-37J13, co... 40 4.0
17emb|AL451071.3|CNS07EEZ Human chromosome 14 DNA sequence BAC R-7... 40 4.0
18emb|AL390800.4|CNS06C7R Human chromosome 14 DNA sequence BAC R-2... 40 4.0
19emb|BX640589.8| Zebrafish DNA sequence from clone CH211-222H13 i... 40 4.0
20gb|AC107633.11| Mus musculus chromosome 12, clone RP23-7P3, comp... 40 4.0
21dbj|AP001825.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 4.0
22gb|AC158398.2| Mus musculus BAC clone RP23-63H11 from chromosome... 40 4.0
23emb|AL731670.13| Mouse DNA sequence from clone RP23-463E7 on chr... 40 4.0

>emb|CR381573.14| Zebrafish DNA sequence from clone DKEY-23M15 in linkage group 24,
             complete sequence
          Length = 120376

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 6     tcaaccaaaccccactctggcacacc 31
             ||||||||||| ||||||||||||||
Sbjct: 94789 tcaaccaaaccgcactctggcacacc 94764



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>emb|BX005057.8| Zebrafish DNA sequence from clone DKEY-12L12 in linkage group 24,
             complete sequence
          Length = 238625

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 6     tcaaccaaaccccactctggcacacc 31
             ||||||||||| ||||||||||||||
Sbjct: 22845 tcaaccaaaccgcactctggcacacc 22870



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>emb|AL974314.21| Zebrafish DNA sequence from clone DKEY-89P3 in linkage group 9,
             complete sequence
          Length = 192510

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 6     tcaaccaaaccccactctggcacacc 31
             ||||||||||| ||||||||||||||
Sbjct: 44672 tcaaccaaaccacactctggcacacc 44697



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>emb|BX927327.14| Zebrafish DNA sequence from clone CH211-11C15 in linkage group 14,
              complete sequence
          Length = 182779

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 7      caaccaaaccccactctggcacacc 31
              |||||||||| ||||||||||||||
Sbjct: 130213 caaccaaaccacactctggcacacc 130237



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>gb|AC093851.5| Homo sapiens chromosome 4 clone RP11-499N1, complete sequence
          Length = 200968

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 41     tgataacagcactccctttca 61
              |||||||||||||||||||||
Sbjct: 199962 tgataacagcactccctttca 199942



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>emb|BX901878.6| Zebrafish DNA sequence from clone DKEY-11O15 in linkage group 21,
             complete sequence
          Length = 217310

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 7     caaccaaaccccactctggcacacc 31
             |||||||||||| ||||||||||||
Sbjct: 33571 caaccaaaccccgctctggcacacc 33547



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>emb|BX284112.25| Zebrafish DNA sequence from clone DKEYP-75A7 in linkage group 21,
              complete sequence
          Length = 216476

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 7      caaccaaaccccactctggcacacc 31
              |||||||||||| ||||||||||||
Sbjct: 152370 caaccaaaccccgctctggcacacc 152394



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>gb|AC096713.3| Homo sapiens BAC clone RP11-1J11 from 4, complete sequence
          Length = 140106

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 41  tgataacagcactccctttca 61
           |||||||||||||||||||||
Sbjct: 988 tgataacagcactccctttca 968



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>gb|AC093382.3| Homo sapiens BAC clone RP11-476D14 from 2, complete sequence
          Length = 57633

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 212   tccaagggagtgaggagcaga 232
             |||||||||||||||||||||
Sbjct: 18595 tccaagggagtgaggagcaga 18575



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>emb|BX001038.6| Zebrafish DNA sequence from clone CH211-12M10 in linkage group 17,
              complete sequence
          Length = 180659

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 7      caaccaaaccccactctggcacacc 31
              |||||||||| ||||||||||||||
Sbjct: 165167 caaccaaaccgcactctggcacacc 165143



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>emb|AL845421.9| Zebrafish DNA sequence from clone CH211-199I15 in linkage group 20,
             complete sequence
          Length = 148289

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 7     caaccaaaccccactctggcacacc 31
             |||||||||| ||||||||||||||
Sbjct: 72733 caaccaaaccgcactctggcacacc 72709



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>gb|AC113554.9| Homo sapiens chromosome 17, clone CTD-2501B8, complete sequence
          Length = 179509

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 11     caaaccccactctggcacaccctc 34
              ||||||||||||||||||| ||||
Sbjct: 141903 caaaccccactctggcacaacctc 141926



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>gb|AC093620.3| Homo sapiens BAC clone RP13-901C16 from 7, complete sequence
          Length = 71183

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    ctctggcacaccctccctcc 39
             ||||||||||||||||||||
Sbjct: 32658 ctctggcacaccctccctcc 32677



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>gb|AC183298.3| Pan troglodytes BAC clone CH251-330I21 from chromosome 17, complete
             sequence
          Length = 174313

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 123   aattcactcttgactatgctctga 146
             |||||| |||||||||||||||||
Sbjct: 18754 aattcattcttgactatgctctga 18731



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>gb|AC009623.6|AC009623 Homo sapiens chromosome 8, clone RP11-219J21, complete sequence
          Length = 196953

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    ctccctccttgataacagca 51
             ||||||||||||||||||||
Sbjct: 47041 ctccctccttgataacagca 47060



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>gb|AC061965.16| Homo sapiens chromosome 15, clone RP11-37J13, complete sequence
          Length = 169399

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     atttgcctcccaactccctt 89
              ||||||||||||||||||||
Sbjct: 151485 atttgcctcccaactccctt 151466



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>emb|AL451071.3|CNS07EEZ Human chromosome 14 DNA sequence BAC R-779M2 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 200109

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     ctccatttgcctcccaactc 85
              ||||||||||||||||||||
Sbjct: 174742 ctccatttgcctcccaactc 174723



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>emb|AL390800.4|CNS06C7R Human chromosome 14 DNA sequence BAC R-254B15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169029

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     ctccatttgcctcccaactc 85
              ||||||||||||||||||||
Sbjct: 122950 ctccatttgcctcccaactc 122969



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>emb|BX640589.8| Zebrafish DNA sequence from clone CH211-222H13 in linkage group 19,
             complete sequence
          Length = 99460

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    aaaccccactctggcacacc 31
             ||||||||||||||||||||
Sbjct: 42751 aaaccccactctggcacacc 42732



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>gb|AC107633.11| Mus musculus chromosome 12, clone RP23-7P3, complete sequence
          Length = 202640

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     ctctggcacaccctccctcc 39
              ||||||||||||||||||||
Sbjct: 150265 ctctggcacaccctccctcc 150284



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>dbj|AP001825.4| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2537O9, complete
             sequences
          Length = 206624

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    ctccatttgcctcccaactccctt 89
             |||||||||| |||||||||||||
Sbjct: 85111 ctccatttgcttcccaactccctt 85088



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>gb|AC158398.2| Mus musculus BAC clone RP23-63H11 from chromosome 12, complete sequence
          Length = 171334

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     ctctggcacaccctccctcc 39
              ||||||||||||||||||||
Sbjct: 112308 ctctggcacaccctccctcc 112289



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>emb|AL731670.13| Mouse DNA sequence from clone RP23-463E7 on chromosome 11, complete
              sequence
          Length = 198411

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     ccctttcatcctctccattt 73
              ||||||||||||||||||||
Sbjct: 135491 ccctttcatcctctccattt 135510


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,420,680
Number of Sequences: 3902068
Number of extensions: 2420680
Number of successful extensions: 41881
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41852
Number of HSP's gapped (non-prelim): 29
length of query: 304
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 282
effective length of database: 17,147,199,772
effective search space: 4835510335704
effective search space used: 4835510335704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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