ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl11a11 |
|---|---|
| Clone Library Name | barley_pub |
>UBP5_ARATH (O22207) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (AtUBP5) Length = 924 Score = 49.3 bits (116), Expect = 2e-06 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 9/89 (10%) Frame = +2 Query: 167 SSASCLPCTAEEERAAVDALTRQADANVKDGDLRYLISQSWWTNWQSYVGL--------- 319 SS+S + EEER + + A+AN K+GD YLI+Q WW W YV Sbjct: 8 SSSSSTDLSPEEERVFIRDIAIAAEANSKEGDTFYLITQRWWQEWIEYVNQDQPCNTNDG 67 Query: 320 LSYGENDTDIPLQPASRPGEIDNRKLVLE 406 S E+ +P IDN L+ + Sbjct: 68 SSLSEHCDSPGSSTLKKPSRIDNSDLIYD 96
>UBP15_MOUSE (Q8R5H1) Ubiquitin carboxyl-terminal hydrolase 15 (EC 3.1.2.15)| (Ubiquitin thioesterase 15) (Ubiquitin-specific-processing protease 15) (Deubiquitinating enzyme 15) Length = 981 Score = 34.7 bits (78), Expect = 0.056 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%) Frame = +2 Query: 203 ERAAVDALTRQAD------ANVKDGDLRYLISQSWWTNWQSYVGLLS---YGENDTDIPL 355 E A D T+++D +++ GD YL+ W+ W+ YVG S Y D ++ Sbjct: 3 EGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV-- 60 Query: 356 QPASRPGEIDNRKLV 400 PG IDN L+ Sbjct: 61 ----YPGPIDNSGLL 71
>UBP15_HUMAN (Q9Y4E8) Ubiquitin carboxyl-terminal hydrolase 15 (EC 3.1.2.15)| (Ubiquitin thioesterase 15) (Ubiquitin-specific-processing protease 15) (Deubiquitinating enzyme 15) (Unph-2) (Unph4) Length = 981 Score = 34.7 bits (78), Expect = 0.056 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%) Frame = +2 Query: 203 ERAAVDALTRQAD------ANVKDGDLRYLISQSWWTNWQSYVGLLS---YGENDTDIPL 355 E A D T+++D +++ GD YL+ W+ W+ YVG S Y D ++ Sbjct: 3 EGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV-- 60 Query: 356 QPASRPGEIDNRKLV 400 PG IDN L+ Sbjct: 61 ----YPGPIDNSGLL 71
>UBP32_HUMAN (Q8NFA0) Ubiquitin carboxyl-terminal hydrolase 32 (EC 3.1.2.15)| (Ubiquitin thioesterase 32) (Ubiquitin-specific-processing protease 32) (Deubiquitinating enzyme 32) (NY-REN-60 antigen) Length = 1604 Score = 33.1 bits (74), Expect = 0.16 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +2 Query: 185 PCTAEEERAAVDA-LTRQADANVKDGDLRYLISQSWWTNWQSYV 313 P T EEE + L R++ ++ G ++IS WW W+ YV Sbjct: 368 PATPEEEGQIIRGWLERESRYGLQAGHNWFIISMQWWQQWKEYV 411
>SUM1_YEAST (P46676) Suppressor of mar1-1 protein (SUM1-1 protein)| Length = 1062 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = -3 Query: 152 H*VSSSPSNPISRPTEIESNRIET 81 H + SSPSNP+S+P + ++R T Sbjct: 374 HQIPSSPSNPVSQPAPVRTSRSAT 397
>IRA2_YEAST (P19158) Inhibitory regulator protein IRA2| Length = 3079 Score = 29.3 bits (64), Expect = 2.3 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 3/88 (3%) Frame = +2 Query: 131 RGMTIPSAEGLLSSASCLPCTAEEERAAVDALTRQADAN---VKDGDLRYLISQSWWTNW 301 +G + PS+ S S + +L+RQ + ++ R L S SW TN Sbjct: 397 QGSSSPSSSSPSSPPSSSSSDNNNQNIIAKSLSRQLSHHQSYIQQQSERKLHS-SWTTNS 455 Query: 302 QSYVGLLSYGENDTDIPLQPASRPGEID 385 QS L S N T ++PGE D Sbjct: 456 QSSTSLSSSTSNSTTTDFSTHTQPGEYD 483
>CATA_SALTY (P17750) Peroxidase/catalase HPI (EC 1.11.1.6)| (Catalase-peroxidase) (Hydroperoxidase I) Length = 726 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%) Frame = +2 Query: 239 DANVKDGDLRYLI--SQSWW-TNWQSYVGL 319 D + GDL+ L+ SQ WW +W SYVGL Sbjct: 70 DYSALKGDLKALLTDSQPWWPADWGSYVGL 99
>CATA_SALTI (Q8Z303) Peroxidase/catalase HPI (EC 1.11.1.6)| (Catalase-peroxidase) (Hydroperoxidase I) Length = 726 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%) Frame = +2 Query: 239 DANVKDGDLRYLI--SQSWW-TNWQSYVGL 319 D + GDL+ L+ SQ WW +W SYVGL Sbjct: 70 DYSALKGDLKALLTDSQPWWPADWGSYVGL 99
>UBP4_HUMAN (Q13107) Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)| (Ubiquitin thioesterase 4) (Ubiquitin-specific-processing protease 4) (Deubiquitinating enzyme 4) (Ubiquitous nuclear protein homolog) Length = 963 Score = 28.9 bits (63), Expect = 3.1 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = +2 Query: 194 AEEERAAVDALTRQADANVKDGDLRYLISQSWWTNWQSYVGLLSYGENDTDIPLQPASRP 373 AE +++ + L R ++ G YLI W+ W+ YVG S+ + + P Sbjct: 13 AETQKSELGPLMR---TTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVG---EHNLFP 66 Query: 374 GEIDNRKL 397 G IDN L Sbjct: 67 GPIDNSGL 74
>DNAK1_PROMA (Q7VC04) Chaperone protein dnaK1 (Heat shock protein 70-1) (Heat| shock 70 kDa protein 1) (HSP70-1) Length = 666 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = +2 Query: 95 STRSQLGVRLDWRGMTIPSAEGLLSSASCLPCTAEEERAAVDALTRQADANVKD--GDLR 268 +T S +GV R I +AEG ++ S + T E E RQ N K+ +L+ Sbjct: 11 TTNSVIGVLEAGRPFVIANAEGSRTTPSVIGYTKESELVVGQQARRQLVLNPKNTFSNLK 70 Query: 269 YLISQSW 289 + +SW Sbjct: 71 RYVGRSW 77
>GLI3_MOUSE (Q61602) Zinc finger protein GLI3| Length = 1596 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 7/41 (17%) Frame = +2 Query: 185 PCTAE-EERAAVDALTRQADANVKDGDL------RYLISQS 286 PC E A++ALT ADAN+ D DL +YL SQ+ Sbjct: 1064 PCPPSITENVALEALTMDADANLNDEDLLPDDVVQYLNSQN 1104
>Y2135_AQUAE (O67893) Hypothetical protein aq_2135| Length = 211 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = +2 Query: 266 RYLISQSWWTNWQSYVGLLSYGENDTDIPLQPASRPGEIDNRKL 397 ++LI+ W+ + SY+G + E D +I R G+++ + L Sbjct: 81 KFLINDEIWSGFASYIGAVPCPEPDVEISEGDVIRVGDVEFKVL 124
>LIFO_BURGL (Q05490) Lipase chaperone (Lipase foldase) (Lipase helper protein)| (Lipase activator protein) (Lipase modulator) Length = 353 Score = 28.1 bits (61), Expect = 5.2 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Frame = +2 Query: 179 CLPCTAEEERAAVDALTRQADANVKDGDLRYLISQSWWTNWQSYVGLLSYGENDTDI--- 349 CL E AA+DAL R+ A DG + W +++Y L+ D + Sbjct: 112 CLTAQGELTPAALDALVRREIAAQLDGSPAQAEALGVWRRYRAYFDALAQLPGDGAVLGD 171 Query: 350 PLQPASRPGEIDNR 391 L PA+ +D R Sbjct: 172 KLDPAAMQLALDQR 185
>VGLB_SHV1 (Q04464) Glycoprotein B precursor| Length = 920 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%) Frame = +2 Query: 188 CTAEEERAAVDAL--TRQADANVKDGDLRYLISQ 283 C A E +AAVDA+ R ++VK G L+Y ++Q Sbjct: 423 CVAREAQAAVDAIYARRYNASHVKVGGLQYYLAQ 456
>CLPX_HUMAN (O76031) ATP-dependent Clp protease ATP-binding subunit ClpX-like,| mitochondrial precursor Length = 633 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/35 (48%), Positives = 18/35 (51%) Frame = -2 Query: 105 DRVESDRNEPTYLGFGTSSVPFGRNGKRRSGAAEA 1 DR+ S R YLGFGT S GK R AA A Sbjct: 427 DRIISRRKNEKYLGFGTPS----NLGKGRRAAAAA 457
>PRMA_BACSK (Q5WHF9) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 315 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = +2 Query: 194 AEEERAAVDALTRQADANVKDGDLRYLISQSWWTNWQSYVGLLSYGENDTDIPL--QPAS 367 AE R + ++ Q D D + + W T W+S+ + E T +P + ++ Sbjct: 79 AEVRRRVHNLVSFQIDIGHGTMDYTEVKEEDWATAWKSFYHPVQVTEQVTIVPTWEEYSA 138 Query: 368 RPGEI 382 RPGEI Sbjct: 139 RPGEI 143
>UBP4_MOUSE (P35123) Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)| (Ubiquitin thioesterase 4) (Ubiquitin-specific-processing protease 4) (Deubiquitinating enzyme 4) (Ubiquitous nuclear protein) Length = 962 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +2 Query: 269 YLISQSWWTNWQSYVGLLSYGENDTDIPLQPASRPGEIDNRKL 397 YLI W+ W+ YVG S+ + + PG IDN L Sbjct: 35 YLIDSRWFKQWKKYVGFDSWDMYNVG---EHNLFPGPIDNSGL 74
>BCAL1_ARATH (Q8W0Z7) Branched-chain-amino-acid aminotransferase-like protein 1| (Atbcat-like) Length = 555 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 8/61 (13%) Frame = -1 Query: 406 LQNKLPVINLSRSTCRLKRNVSVI--------LPITE*ANI*LPVGPPAL*DEIAEIAVF 251 L+ LP+ N+ RS +K + S++ LP+ E A + VG L E+A+++VF Sbjct: 224 LERSLPLYNILRS--HVKHSSSLLSSPLPPPSLPVPENAKLLAWVGDEILPREMAKVSVF 281 Query: 250 D 248 D Sbjct: 282 D 282
>RAD18_SCHPO (O74747) Postreplication repair ubiquitin-protein ligase E3 rad18| (EC 6.-.-.-) (RAD18 homolog) Length = 387 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +2 Query: 125 DWRGMTIPSAEGLLSSASCLPC 190 DW IPS +GL SS CL C Sbjct: 11 DWNQTKIPSLKGLDSSLRCLIC 32 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,575,733 Number of Sequences: 219361 Number of extensions: 1145720 Number of successful extensions: 3123 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3060 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3122 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
