>ref|XM_483229.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2900

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 76/88 (86%), Gaps = 4/88 (4%)
 Strand = Plus / Plus

                                                                       
Query: 169 cacccgtctcggacccaggaccccatcgggctggatctagggtt-gcaaggggaggggtt 227
           |||||||||||| ||| ||||||||  |||||||||||||| || || |||   ||||||
Sbjct: 181 cacccgtctcggccccgggaccccactgggctggatctaggtttggcgagg---ggggtt 237

                                       
Query: 228 ctggaggcctccgccacgatggaggcgg 255
           ||||| ||||||||| ||||||||||||
Sbjct: 238 ctggaagcctccgccgcgatggaggcgg 265



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                       
Query: 281 cttcaaggccgacttcaccgactccggcgcctaccagctccgggagcgcatgcgggagaa 340
           ||||||||||||| |||||| | |||||| |  ||||||| | |||||| ||||||||||
Sbjct: 303 cttcaaggccgacctcaccggcgccggcgtcgtccagctcagcgagcgcgtgcgggagaa 362

                        
Query: 341 gctgcgtgagttc 353
           |||||| ||||||
Sbjct: 363 gctgcgggagttc 375

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 76/88 (86%), Gaps = 4/88 (4%)
 Strand = Plus / Plus

                                                                            
Query: 169      cacccgtctcggacccaggaccccatcgggctggatctagggtt-gcaaggggaggggtt 227
                |||||||||||| ||| ||||||||  |||||||||||||| || || |||   ||||||
Sbjct: 24931653 cacccgtctcggccccgggaccccactgggctggatctaggtttggcgagg---ggggtt 24931709

                                            
Query: 228      ctggaggcctccgccacgatggaggcgg 255
                ||||| ||||||||| ||||||||||||
Sbjct: 24931710 ctggaagcctccgccgcgatggaggcgg 24931737



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                            
Query: 281      cttcaaggccgacttcaccgactccggcgcctaccagctccgggagcgcatgcgggagaa 340
                ||||||||||||| |||||| | |||||| |  ||||||| | |||||| ||||||||||
Sbjct: 24931775 cttcaaggccgacctcaccggcgccggcgtcgtccagctcagcgagcgcgtgcgggagaa 24931834

                             
Query: 341      gctgcgtgagttc 353
                |||||| ||||||
Sbjct: 24931835 gctgcgggagttc 24931847

>dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1134_H03
          Length = 135914

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 76/88 (86%), Gaps = 4/88 (4%)
 Strand = Plus / Plus

                                                                         
Query: 169   cacccgtctcggacccaggaccccatcgggctggatctagggtt-gcaaggggaggggtt 227
             |||||||||||| ||| ||||||||  |||||||||||||| || || |||   ||||||
Sbjct: 33368 cacccgtctcggccccgggaccccactgggctggatctaggtttggcgagg---ggggtt 33424

                                         
Query: 228   ctggaggcctccgccacgatggaggcgg 255
             ||||| ||||||||| ||||||||||||
Sbjct: 33425 ctggaagcctccgccgcgatggaggcgg 33452



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                         
Query: 281   cttcaaggccgacttcaccgactccggcgcctaccagctccgggagcgcatgcgggagaa 340
             ||||||||||||| |||||| | |||||| |  ||||||| | |||||| ||||||||||
Sbjct: 33490 cttcaaggccgacctcaccggcgccggcgtcgtccagctcagcgagcgcgtgcgggagaa 33549

                          
Query: 341   gctgcgtgagttc 353
             |||||| ||||||
Sbjct: 33550 gctgcgggagttc 33562

>dbj|AK064868.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I21, full
           insert sequence
          Length = 2901

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 76/88 (86%), Gaps = 4/88 (4%)
 Strand = Plus / Plus

                                                                       
Query: 169 cacccgtctcggacccaggaccccatcgggctggatctagggtt-gcaaggggaggggtt 227
           |||||||||||| ||| ||||||||  |||||||||||||| || || |||   ||||||
Sbjct: 181 cacccgtctcggccccgggaccccactgggctggatctaggtttggcgagg---ggggtt 237

                                       
Query: 228 ctggaggcctccgccacgatggaggcgg 255
           ||||| ||||||||| ||||||||||||
Sbjct: 238 ctggaagcctccgccgcgatggaggcgg 265



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                       
Query: 281 cttcaaggccgacttcaccgactccggcgcctaccagctccgggagcgcatgcgggagaa 340
           ||||||||||||| |||||| | |||||| |  ||||||| | |||||| ||||||||||
Sbjct: 303 cttcaaggccgacctcaccggcgccggcgtcgtccagctcagcgagcgcgtgcgggagaa 362

                        
Query: 341 gctgcgtgagttc 353
           |||||| ||||||
Sbjct: 363 gctgcgggagttc 375

>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence
          Length = 250948

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 52     tccaggcgccggcgcctcctcc 73
              ||||||||||||||||||||||
Sbjct: 202702 tccaggcgccggcgcctcctcc 202723

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 278     catcttcaaggccgacttcaccgac 302
               |||||||||||||||| ||||||||
Sbjct: 3089134 catcttcaaggccgacatcaccgac 3089158

>gb|AC121975.3| Mus musculus BAC clone RP24-286J21 from chromosome 8, complete sequence
          Length = 174928

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 56    ggcgccggcgcctcctcccggctc 79
             |||||| |||||||||||||||||
Sbjct: 18483 ggcgcccgcgcctcctcccggctc 18506

>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12
          Length = 323450

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 278    catcttcaaggccgacttcaccga 301
              |||||||||||||||| |||||||
Sbjct: 129757 catcttcaaggccgacatcaccga 129780

>emb|Z71182.1|HS248J6 Human DNA sequence from clone RP1-248J6 on chromosome X, complete
            sequence
          Length = 76552

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 38   accccatccccacctccagg 57
            ||||||||||||||||||||
Sbjct: 5619 accccatccccacctccagg 5600

>emb|AL592402.12| Human DNA sequence from clone RP11-554K11 on chromosome 1 Contains a
             processed pseudogene similar to ribosomal protein L31
             (RPL31), complete sequence
          Length = 200461

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ccccatccccacctccaggc 58
             ||||||||||||||||||||
Sbjct: 50843 ccccatccccacctccaggc 50824

>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 299     cgactccggcgcctaccagctccg 322
               ||||||| ||||||||||||||||
Sbjct: 3577059 cgactcccgcgcctaccagctccg 3577082

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    atccccacctccaggcgccg 62
             ||||||||||||||||||||
Sbjct: 25752 atccccacctccaggcgccg 25733

>gb|AC103359.6| Mus musculus chromosome 8, clone RP24-365B9, complete sequence
          Length = 178620

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 56     ggcgccggcgcctcctcccggctc 79
              |||||| |||||||||||||||||
Sbjct: 153516 ggcgcccgcgcctcctcccggctc 153539


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,755,406
Number of Sequences: 3902068
Number of extensions: 2755406
Number of successful extensions: 58350
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58050
Number of HSP's gapped (non-prelim): 300
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)