Clone Name | bastl11a05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 90 cgccgtggagggttagggttttgaggg 116 ||||||||||||||||||||||||||| Sbjct: 27513153 cgccgtggagggttagggttttgaggg 27513127
>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0657H12 Length = 142688 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 90 cgccgtggagggttagggttttgaggg 116 ||||||||||||||||||||||||||| Sbjct: 104875 cgccgtggagggttagggttttgaggg 104849
>dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A10, full insert sequence Length = 3437 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 90 cgccgtggagggttagggttttgaggg 116 ||||||||||||||||||||||||||| Sbjct: 256 cgccgtggagggttagggttttgaggg 282
>emb|X67250.1|RNCHIM R.norvegicus mRNA for n-chimaerin Length = 2309 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 gatagagacggtgaaaaggcg 282 ||||||||||||||||||||| Sbjct: 1002 gatagagacggtgaaaaggcg 1022
>ref|NM_032083.1| Rattus norvegicus chimerin (chimaerin) 1 (Chn1), mRNA Length = 2309 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 gatagagacggtgaaaaggcg 282 ||||||||||||||||||||| Sbjct: 1002 gatagagacggtgaaaaggcg 1022
>gb|BC094519.1| Rattus norvegicus chimerin (chimaerin) 1, mRNA (cDNA clone MGC:105381 IMAGE:7315609), complete cds Length = 2270 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 gatagagacggtgaaaaggcg 282 ||||||||||||||||||||| Sbjct: 1051 gatagagacggtgaaaaggcg 1071
>ref|XM_579545.1| PREDICTED: Rattus norvegicus chimerin (chimaerin) 1 (Chn1), mRNA Length = 2267 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 gatagagacggtgaaaaggcg 282 ||||||||||||||||||||| Sbjct: 993 gatagagacggtgaaaaggcg 1013
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 tcctttttgggaccgaggata 265 ||||||||||||||||||||| Sbjct: 91849 tcctttttgggaccgaggata 91869
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 gtggagggttagggttttga 113 |||||||||||||||||||| Sbjct: 2052 gtggagggttagggttttga 2071
>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete sequence Length = 162339 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gtggagggttagggttttga 113 |||||||||||||||||||| Sbjct: 1907 gtggagggttagggttttga 1888
>gb|DQ139273.1| Sus scrofa dopamine beta-hydroxylase (DBH) mRNA, partial cds Length = 1675 Score = 40.1 bits (20), Expect = 5.5 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 305 gtcgtgtctgctcctcccgggagacgtg 332 |||||||||| ||||||||||||||||| Sbjct: 1267 gtcgtgtctg-tcctcccgggagacgtg 1293
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gtggagggttagggttttga 113 |||||||||||||||||||| Sbjct: 16657790 gtggagggttagggttttga 16657771
>ref|XM_574182.1| PREDICTED: Rattus norvegicus similar to n-chimaerin (LOC498895), mRNA Length = 1426 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 gatagagacggtgaaaaggc 281 |||||||||||||||||||| Sbjct: 640 gatagagacggtgaaaaggc 659
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gtggagggttagggttttga 113 |||||||||||||||||||| Sbjct: 16666431 gtggagggttagggttttga 16666412
>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence Length = 949626 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ctcgtggtagtagaaagagg 143 |||||||||||||||||||| Sbjct: 389539 ctcgtggtagtagaaagagg 389520 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,882,815 Number of Sequences: 3902068 Number of extensions: 1882815 Number of successful extensions: 30369 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 30273 Number of HSP's gapped (non-prelim): 97 length of query: 410 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 388 effective length of database: 17,147,199,772 effective search space: 6653113511536 effective search space used: 6653113511536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)