>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer|
            protein 3) (Cancer-amplified transcriptional coactivator
            ASC-2) (Activating signal cointegrator 2) (ASC-2)
            (Peroxisome proliferator-activated receptor-interacting
            protein) (P
          Length = 2063

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 92   PWWRLASLPPSTSSSGLASYPPYKDRQERGQGPGAPVGSDGSRL 223
            P  +  S+P   S  G AS PP  D+Q        P+GS+  ++
Sbjct: 1069 PMQQSGSVPVMVSLQGPASVPPSPDKQRMPMPVNTPLGSNSRKM 1112

>UL61_HCMVA (P16818) Hypothetical protein UL61|
          Length = 431

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 131 SSGLASYPPYKDRQERGQGPGAPVGS----DGSRLPSAGI 238
           S G A  P  +  +ERG G   P+GS    DG+R P AG+
Sbjct: 253 SPGAARDPGPEPGEERGGGGKPPLGSPRATDGNRDPGAGV 292

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 89   SPWWRLASLPPSTSSSGLASYPPYKDRQERGQGPGAPVGSDGS 217
            SP   ++S PP T  SG    P      E+G+ P  P GSD S
Sbjct: 3174 SPAVTMSSAPPETGYSG----PAVSGSYEQGKAPEHPRGSDRS 3212

>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2160

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 128  SSSGLASYPPYKDRQERGQGPGAPVGSDGSRLPSAG 235
            S    +S  P  +RQ R  GPG   GS GS     G
Sbjct: 1384 SKRSFSSQRPGMERQNRRPGPGGKAGSSGSSSGGGG 1419

>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2157

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 128  SSSGLASYPPYKDRQERGQGPGAPVGSDGSRLPSAG 235
            S    +S  P  +RQ R  GPG   GS GS     G
Sbjct: 1381 SKRSFSSQRPGMERQNRRPGPGGKAGSSGSSSGGGG 1416

>NCOA6_RAT (Q9JLI4) Nuclear receptor coactivator 6 (Amplified in breast cancer|
           protein 3) (Cancer-amplified transcriptional coactivator
           ASC-2) (Activating signal cointegrator 2) (ASC-2)
           (Peroxisome proliferator-activated receptor-interacting
           protein) (PPA
          Length = 418

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 92  PWWRLASLPPSTSSSGLASYPPYKDRQERGQGPGAPVGSDGSRL 223
           P  +  ++P   S  G AS PP  D+Q        P+GS+  ++
Sbjct: 364 PMQQSGNVPVMVSLQGPASVPPSPDKQRMPMPVNTPLGSNSRKM 407

>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
 Frame = +2

Query: 116 PPSTSSSGLASYPPY----KDRQERGQGPG-----APVGSDGSRLP 226
           PPST SSG+++ PP           G GPG      P G  G ++P
Sbjct: 160 PPSTPSSGVSTTPPQTGGPPPPPAGGAGPGPKPGPGPGGPKGGKMP 205


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,060,775
Number of Sequences: 219361
Number of extensions: 423337
Number of successful extensions: 2271
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2264
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)