>Y1163_HAEIN (Q57252) Protein HI1163|
          Length = 1027

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 139 QPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDP 264
           +P G ++H  GFL +    A++ A    R A  G PL  VDP
Sbjct: 826 KPNGKAMHIKGFLKRFSKTAQNQAEFLNRMAKLGIPLVGVDP 867

>YDIJ_ECOLI (P77748) Hypothetical protein ydiJ|
          Length = 1018

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 142 PGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDP 264
           P G + H  GFL +    A+ TA    R A  G P+  VDP
Sbjct: 826 PNGKAQHIKGFLNRFAKTAKKTADFLNRMAKLGMPMVGVDP 866

>NFAC4_HUMAN (Q14934) Nuclear factor of activated T-cells, cytoplasmic 4|
           (NF-ATc4) (NFATc4) (T cell transcription factor NFAT3)
           (NF-AT3)
          Length = 902

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
 Frame = +1

Query: 136 PQPGGSSLHSPGFLLQPPDLARSTAIC------FRRAAAR---GWPLAAVDPRSAGTPSW 288
           P PG SSL S  F     D A   A C         AA+R   G PL +  PR++  P W
Sbjct: 169 PSPGSSSLSSWSFFSDASDEAALYAACDEVESELNEAASRFGLGSPLPS--PRASPRP-W 225

Query: 289 SPPVPW 306
           +P  PW
Sbjct: 226 TPEDPW 231

>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 443

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 305 QGTGGLQEG---VPADLGSTAARGHPLAAARRKQMAVERARSGG 183
           QG GG +E    V  D G+  + GHPL+ A +   A+     GG
Sbjct: 29  QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72

>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 51)
           (Ubiquitin-specific-processing protease 51)
           (Deubiquitinating enzyme 51)
          Length = 711

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +1

Query: 121 KP*PRPQPGGSSLHSPGFLLQPPDLAR 201
           KP PRPQP   S   PG    PP  AR
Sbjct: 103 KPRPRPQPRARSRSQPGLSAPPPPPAR 129

>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 305 QGTGGLQEG---VPADLGSTAARGHPLAAARRKQMAVERARSGG 183
           QG GG +E    V  D G+  + GHPL+ A +   A+     GG
Sbjct: 29  QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72

>KAPR_ASPFU (Q96UX3) cAMP-dependent protein kinase regulatory subunit (PKA|
           regulatory subunit)
          Length = 413

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
 Frame = +1

Query: 148 GSSLHSPGFLLQPPDLARSTAICFRRAAARGWP------------LAAVDPRSAGTPSWS 291
           G      G  ++PP  AR TA     AA +G+P              +++P SAG+ SW+
Sbjct: 85  GQGSEGQGEHVEPPGGARPTA-----AANQGFPNNYALGRRTSVSAESLNPTSAGSDSWT 139

Query: 292 PP 297
           PP
Sbjct: 140 PP 141

>ADRB1_FELCA (Q9TST6) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 474

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +1

Query: 151 SSLHSPGFLLQPPDLARS--TAICFRRAAARGWPLAAVD-PRSAG-TPSWSPP 297
           +S  +P    + PD  ++    +CF R AARG   AA D PR++G  P   PP
Sbjct: 365 NSAFNPIIYCRSPDFRKAFQRLLCFARRAARGGHAAAGDRPRASGCLPGTRPP 417

>BRO1_EMENI (Q6XPR4) Vacuolar protein-sorting protein bro1 (BRO|
           domain-containing protein 1)
          Length = 1000

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +1

Query: 115 SAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWP-LAAVDPRSAGTPSWS 291
           S +P P   P GSS   P     PP   ++ A     A  +  P  A   P+  GTP   
Sbjct: 791 STEPKPPSVPPGSSTAGPAKAKSPPPPVKAPAYPTNIAPPKASPHFAPTVPQQHGTPVSH 850

Query: 292 PPVPW 306
            P P+
Sbjct: 851 SPAPY 855

>CT055_MOUSE (Q8R184) Protein C20orf55 homolog|
          Length = 296

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = +1

Query: 106 PFHSAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAIC---FRRAAA---RGWPLAAVDPR 267
           P  ++   P P PG ++  SPG   +PP L RS +     F RAAA   R +    +DP 
Sbjct: 159 PLPASPARPYPSPGTTTTSSPG---RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPE 215

Query: 268 SA 273
            A
Sbjct: 216 EA 217

>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 21/66 (31%), Positives = 25/66 (37%)
 Frame = +1

Query: 106 PFHSAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPS 285
           P  +A P P P PGG+ +  P     PP L  S  +        G  L    P   G P 
Sbjct: 666 PGATAIPPPPPLPGGTGIPPP-----PPPLPGSVGVPPPPPLPGGPGLPPPPPPFPGAPG 720

Query: 286 WSPPVP 303
             PP P
Sbjct: 721 IPPPPP 726

>QUEA_RHOS4 (Q3J252) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 346

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
 Frame = -1

Query: 278 VPADLGSTAARGHPLAAARRKQMAVERARSGGWRR--------KPGE 162
           +PA L  T  RG   A AR +   +E A +GGWR         KPGE
Sbjct: 62  IPARLTGTRTRGE--AEARVEVTLMEPAAAGGWRAMAKPLRKLKPGE 106

>LSB6_YEAST (P42951) Phosphatidylinositol 4-kinase LSB6 (EC 2.7.1.67)|
           (PI4-kinase) (PtdIns-4-kinase)
          Length = 607

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 224 RRKQMAVERARSGGWRRKPGEWRLDPPGW 138
           R K  A++   S  W+  P EWRL P GW
Sbjct: 406 RLKLAAIDNGLSFPWKH-PDEWRLYPYGW 433

>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +1

Query: 145 GGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVD 261
           GG SLH P F L       ++A C   A ARG P    D
Sbjct: 41  GGFSLHPPYFNLAEGARIAASATCGEEAPARGSPRPTED 79

>Y1375_MYCTU (P71803) Hypothetical UPF0142 protein Rv1375/MT1419|
          Length = 439

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 293 GLQEGVPADLGSTAARGHPLAAARRKQMAVERARSGGWR 177
           G +E +P+ +     R H  A AR+  + + RAR   WR
Sbjct: 337 GAREDLPSAIYHRFGRVHTYAKARKTSLRLNRARPTPWR 375

>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)|
          Length = 2567

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 293 GLQEGVPADLGSTAARGH-PLAAARRKQMAVERARSG 186
           G ++G+PA +GS A R +  L   RR Q  V   RSG
Sbjct: 627 GRRDGLPAHIGSMAQRAYWALLNQRRDQSIVALGRSG 663

>ACHB3_RAT (P12391) Neuronal acetylcholine receptor protein, beta-3 subunit|
           precursor
          Length = 464

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 130 PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAAR--GWPLAAVDPRSAGTPSWSPPVP 303
           P    G +S+  P   L  PD+     + F  A  R  G  +     +S+GT SW+PP  
Sbjct: 100 PEEYGGINSIKVPSESLWLPDI-----VLFENADGRFEGSLMTKAIVKSSGTVSWTPPAS 154

Query: 304 WQS 312
           ++S
Sbjct: 155 YKS 157

>ACHB3_MOUSE (Q8BMN3) Neuronal acetylcholine receptor protein, beta-3 subunit|
           precursor
          Length = 464

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 130 PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAAR--GWPLAAVDPRSAGTPSWSPPVP 303
           P    G +S+  P   L  PD+     + F  A  R  G  +     +S+GT SW+PP  
Sbjct: 100 PEDYGGINSIKVPSESLWLPDI-----VLFENADGRFEGSLMTKAIVKSSGTVSWTPPAS 154

Query: 304 WQS 312
           ++S
Sbjct: 155 YKS 157

>PACC_NEUCR (Q7RVQ8) pH-response transcription factor pacC/RIM101|
          Length = 621

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 160 HSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPSWSP 294
           HSP +  +P       +I     A+   PL+A  P SAGTP+ +P
Sbjct: 393 HSPTYATRP-------SIDPYHGASLASPLSATSPHSAGTPAVTP 430

>BTBD7_MOUSE (Q8CFE5) BTB/POZ domain-containing protein 7|
          Length = 1130

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 136 PQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAA 255
           P+PG   ++ PG  + PPD   +T +  +  AA     AA
Sbjct: 808 PKPGPPPVYLPGVKVAPPDCTNTTGLGRQTVAAAAAAAAA 847


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,866,573
Number of Sequences: 219361
Number of extensions: 569416
Number of successful extensions: 1973
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1971
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)