ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DNBI_EBV (P03227) Major DNA-binding protein 29 4.2

>DNBI_EBV (P03227) Major DNA-binding protein|
          Length = 1128

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +3

Query: 39  RPCASGPHSPSVTGTRAPG 95
           RPC SG   P VTGT  PG
Sbjct: 381 RPCFSGWGGPDVTGTNGPG 399


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,559,576
Number of Sequences: 219361
Number of extensions: 248440
Number of successful extensions: 1005
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 80,573,946
effective HSP length: 11
effective length of database: 78,160,975
effective search space used: 1875863400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top