Clone Name | bastl10h08 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DN... | 40 | 1.3 | 2 | emb|AL606480.11| Mouse DNA sequence from clone RP23-112C19 on ch... | 38 | 5.0 | 3 | dbj|AB168308.1| Macaca fascicularis testis cDNA clone: QtsA-1110... | 38 | 5.0 |
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>dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DNA, complete sequence Length = 94287 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 gcccgcagcgcgcagccgaa 92 |||||||||||||||||||| Sbjct: 2914 gcccgcagcgcgcagccgaa 2895
>emb|AL606480.11| Mouse DNA sequence from clone RP23-112C19 on chromosome 11 Contains the 3' end of the Col1a1 gene for procollagen type I alpha 1, the Sgca gene for alpha sarcoglycan (dystrophin-associated glycoprotein), the Hils1 gene for histone H1-like protein in spermatids 1, the Ppp1r9b gene for protein phosphatase 1 regulatory subunit 9B, a novel gene (A930041A10Rik, B930032I08Rik, C530046K03Rik), the Pdk2 gene for pyruvate dehydrogenase kinase isoenzyme 2, a novel gene, the Itga3 gene for integrin alpha 3, the Dlx3 gene for distal-less homeobox 3 and three CpG islands, complete sequence Length = 186276 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 acacacacacagagccgac 68 ||||||||||||||||||| Sbjct: 65237 acacacacacagagccgac 65219
>dbj|AB168308.1| Macaca fascicularis testis cDNA clone: QtsA-11109, similar to human trophoblast glycoprotein (TPBG), mRNA, RefSeq: NM_006670.3 Length = 2714 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 gcccgcagcgcgcagccga 91 ||||||||||||||||||| Sbjct: 423 gcccgcagcgcgcagccga 441 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,549,895 Number of Sequences: 3902068 Number of extensions: 10549895 Number of successful extensions: 187127 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 187120 Number of HSP's gapped (non-prelim): 7 length of query: 111 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 90 effective length of database: 17,151,101,840 effective search space: 1543599165600 effective search space used: 1543599165600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)