Clone Name | bastl10h07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC160649.2| Pan troglodytes BAC clone CH251-568N12 from chromosome unknown, complete sequence Length = 192241 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cttcttctgaaagaaaaaagaa 74 |||||||||||||||||||||| Sbjct: 73558 cttcttctgaaagaaaaaagaa 73537
>gb|AC084515.1|CBRG17N15 Caenorhabditis briggsae cosmid G17N15, complete sequence Length = 40280 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 57 ttctgaaagaaaaaagaagcaa 78 |||||||||||||||||||||| Sbjct: 19309 ttctgaaagaaaaaagaagcaa 19288
>emb|AL162759.4|CNS01RHZ Human chromosome 14 DNA sequence BAC R-785G15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 174273 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 53 cttcttctgaaagaaaaaagaa 74 |||||||||||||||||||||| Sbjct: 45421 cttcttctgaaagaaaaaagaa 45442
>gb|AC151369.4| Aotus nancymaae clone CH258-279B4, complete sequence Length = 196485 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 cttcttctgaaagaaaaaaga 73 ||||||||||||||||||||| Sbjct: 96534 cttcttctgaaagaaaaaaga 96514
>gb|AC148562.3| Callicebus moloch clone LB5-363C5, complete sequence Length = 217859 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 cttcttctgaaagaaaaaaga 73 ||||||||||||||||||||| Sbjct: 178133 cttcttctgaaagaaaaaaga 178113
>gb|AC154450.3| Mus musculus BAC clone RP24-169J2 from chromosome 12, complete sequence Length = 168477 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 tctatccactctccttcttct 60 ||||||||||||||||||||| Sbjct: 79657 tctatccactctccttcttct 79677
>gb|AC154207.3| Mus musculus BAC clone RP24-377E1 from chromosome 13, complete sequence Length = 181174 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 gaaagaaaaaagaagcaaccg 81 ||||||||||||||||||||| Sbjct: 99388 gaaagaaaaaagaagcaaccg 99368
>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold Length = 1787293 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 cttcttctgaaagaaaaaaga 73 ||||||||||||||||||||| Sbjct: 285128 cttcttctgaaagaaaaaaga 285108
>gb|AC092704.10| Homo sapiens chromosome 18, clone RP11-687D19, complete sequence Length = 185257 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 tctccttcttctgaaagaaaaaaga 73 ||||||| ||||||||||||||||| Sbjct: 91157 tctccttgttctgaaagaaaaaaga 91133
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 ttcggcggaggtggacgtcga 334 ||||||||||||||||||||| Sbjct: 1708598 ttcggcggaggtggacgtcga 1708618
>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold Length = 2105003 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 cttcttctgaaagaaaaaaga 73 ||||||||||||||||||||| Sbjct: 377473 cttcttctgaaagaaaaaaga 377453
>gb|AC108914.8| Mus musculus chromosome 1, clone RP23-435E15, complete sequence Length = 212494 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 atccactctccttcttctgaaaga 66 ||||||| |||||||||||||||| Sbjct: 90823 atccactttccttcttctgaaaga 90800
>ref|XM_517624.1| PREDICTED: Pan troglodytes similar to adenylate cyclase 2; ATP pyrophosphate-lyase; type II adenylate cyclase; 3,5-cyclic AMP synthetase; adenylyl cyclase 2; adenylate cyclase II (LOC461715), mRNA Length = 3597 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 atccagatgctgccgctgct 146 |||||||||||||||||||| Sbjct: 2001 atccagatgctgccgctgct 1982
>gb|AC007418.9| Drosophila melanogaster clone BACR16P22, complete sequence Length = 179325 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tgctgccgctgctactaact 153 |||||||||||||||||||| Sbjct: 16768 tgctgccgctgctactaact 16787
>emb|CR847543.13| Zebrafish DNA sequence from clone DKEY-183P4 in linkage group 8, complete sequence Length = 207382 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 ctctccttcttctgaaagaaaaaa 71 |||||||||| ||||||||||||| Sbjct: 135474 ctctccttctcctgaaagaaaaaa 135451
>emb|CR749634.1| Homo sapiens mRNA; cDNA DKFZp686J099 (from clone DKFZp686J099) Length = 9825 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 atccagatgctgccgctgct 146 |||||||||||||||||||| Sbjct: 8451 atccagatgctgccgctgct 8432
>gb|AC118563.1| Homo sapiens chromosome 5 clone CTD-2243F8, complete sequence Length = 105027 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 atccagatgctgccgctgct 146 |||||||||||||||||||| Sbjct: 56796 atccagatgctgccgctgct 56777
>gb|M31129.1|DROGPAD Drosophila melanogaster G protein alpha subunit gene, partial cds Length = 1889 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tgctgccgctgctactaact 153 |||||||||||||||||||| Sbjct: 192 tgctgccgctgctactaact 211
>gb|AC008189.3|AC008189 Drosophila melanogaster, chromosome 3R, region 82C-82D, BAC clone BACR02C19, complete sequence Length = 188359 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 caaaagcgaaaccaaaacag 109 |||||||||||||||||||| Sbjct: 66225 caaaagcgaaaccaaaacag 66244
>gb|AC007398.6|AC007398 Drosophila melanogaster, chromosome 2R, region 47A-47B, BAC clone BACR20O22, complete sequence Length = 168567 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tgctgccgctgctactaact 153 |||||||||||||||||||| Sbjct: 117508 tgctgccgctgctactaact 117527
>gb|AC007099.3| Homo sapiens BAC clone RP11-445A14 from 2, complete sequence Length = 125032 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tctgaaagaaaaaagaagca 77 |||||||||||||||||||| Sbjct: 64824 tctgaaagaaaaaagaagca 64805
>gb|AC010346.6|AC010346 Homo sapiens chromosome 5 clone CITB-H1_2018B2, complete sequence Length = 109626 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 atccagatgctgccgctgct 146 |||||||||||||||||||| Sbjct: 12699 atccagatgctgccgctgct 12680
>emb|CT009703.8| Zebrafish DNA sequence from clone DKEYP-32B7 in linkage group 12, complete sequence Length = 129251 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ccagaaaatatcatttctag 191 |||||||||||||||||||| Sbjct: 76235 ccagaaaatatcatttctag 76254
>gb|AE003829.4| Drosophila melanogaster chromosome 2R, section 21 of 73 of the complete sequence Length = 281782 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tgctgccgctgctactaact 153 |||||||||||||||||||| Sbjct: 96412 tgctgccgctgctactaact 96431
>gb|AF082183.1|AF082183 Streptococcus mutans ABC transporter MutF (mutF), membrane spanning protein MutE (mutE), and membrane protein MutG (mutG) genes, complete cds; and fructose bi-phosphate aldolase (fba) gene, partial cds Length = 3398 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 agaaaatatcatttctagcg 193 |||||||||||||||||||| Sbjct: 2378 agaaaatatcatttctagcg 2397
>gb|AE003605.3| Drosophila melanogaster chromosome 3R, section 3 of 118 of the complete sequence Length = 273418 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 caaaagcgaaaccaaaacag 109 |||||||||||||||||||| Sbjct: 153126 caaaagcgaaaccaaaacag 153145
>gb|AC148246.3| Saimiri boliviensis boliviensis clone CH254-471K13, complete sequence Length = 177755 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 ttcttctgaaagaaaaaaga 73 |||||||||||||||||||| Sbjct: 71118 ttcttctgaaagaaaaaaga 71099
>emb|AL731851.13| Mouse DNA sequence from clone RP23-362N19 on chromosome 2, complete sequence Length = 207372 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 tccttcttctgaaagaaaaaagaa 74 |||||||||| ||||||||||||| Sbjct: 14411 tccttcttcttaaagaaaaaagaa 14434 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,856,737 Number of Sequences: 3902068 Number of extensions: 3856737 Number of successful extensions: 87929 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87831 Number of HSP's gapped (non-prelim): 98 length of query: 371 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 349 effective length of database: 17,147,199,772 effective search space: 5984372720428 effective search space used: 5984372720428 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)