ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (... 29 3.5
2ZBT38_RAT (Q5EXX3) Zinc finger and BTB domain-containing protein... 29 3.5
3BGAL_DIACA (Q00662) Putative beta-galactosidase precursor (EC 3.... 29 3.5
4TTGH_PSEPU (Q93PU4) Toluene efflux pump membrane transporter ttgH 28 6.0
5SRPB_PSEPU (O31100) Solvent resistant pump membrane transporter ... 28 6.0

>BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 828

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 224 DVHEPVRGQYDFEGRNDLV 280
           + HEP R QYDF G  DLV
Sbjct: 80  NAHEPSRRQYDFSGNLDLV 98



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>ZBT38_RAT (Q5EXX3) Zinc finger and BTB domain-containing protein 38 (Zinc|
           finger protein expressed in neurons) (Zenon)
          Length = 1203

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 12  SSPTLHSTSTALLARLVHRTPSSHEQGAVLVAVSSQESDKAMAAVGR 152
           SS   HS + A LA   H++PS       L+  S  E+DKA     R
Sbjct: 716 SSVIKHSNAIACLANSNHQSPSQPVASPSLIKDSKPEADKASKLASR 762



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>BGAL_DIACA (Q00662) Putative beta-galactosidase precursor (EC 3.2.1.23)|
           (Lactase) (SR12 protein)
          Length = 731

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 230 HEPVRGQYDFEGRNDLV 280
           HEP  G+Y FEGR DLV
Sbjct: 86  HEPSEGKYYFEGRYDLV 102



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>TTGH_PSEPU (Q93PU4) Toluene efflux pump membrane transporter ttgH|
          Length = 1049

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 126 RSPEKKQRQGLHLVRGMMAFGVLAELVAR 40
           R PE+ QRQGL +V+  M F ++  LV R
Sbjct: 117 RLPEEVQRQGLRVVKYQMNFFLVMSLVDR 145



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>SRPB_PSEPU (O31100) Solvent resistant pump membrane transporter srpB|
          Length = 1049

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 126 RSPEKKQRQGLHLVRGMMAFGVLAELVAR 40
           R PE+ QRQGL +V+  M F ++  LV R
Sbjct: 117 RLPEEVQRQGLRVVKYQMNFFLVMSLVDR 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,108,313
Number of Sequences: 219361
Number of extensions: 331637
Number of successful extensions: 1394
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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