Clone Name | bastl10h05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK067479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M10, full insert sequence Length = 3250 Score = 77.8 bits (39), Expect = 2e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 230 cacgagcccgtccggggacagtacgacttcgagggcaggaatgacct 276 |||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 564 cacgaggccgtccggggacagtacgacttcgagggcaggaaggacct 610
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 247 acagtacgacttcgagggcaggaatgacct 276 |||||||||||||||||||||||| ||||| Sbjct: 8171644 acagtacgacttcgagggcaggaaggacct 8171615 Score = 46.1 bits (23), Expect = 0.060 Identities = 23/23 (100%) Strand = Plus / Plus Query: 13 cgtcgcccacactccactccacg 35 ||||||||||||||||||||||| Sbjct: 23375678 cgtcgcccacactccactccacg 23375700
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 247 acagtacgacttcgagggcaggaatgacct 276 |||||||||||||||||||||||| ||||| Sbjct: 8169479 acagtacgacttcgagggcaggaaggacct 8169450 Score = 46.1 bits (23), Expect = 0.060 Identities = 23/23 (100%) Strand = Plus / Plus Query: 13 cgtcgcccacactccactccacg 35 ||||||||||||||||||||||| Sbjct: 23368706 cgtcgcccacactccactccacg 23368728
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 247 acagtacgacttcgagggcaggaatgacct 276 |||||||||||||||||||||||| ||||| Sbjct: 103074 acagtacgacttcgagggcaggaaggacct 103045
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Minus Query: 161 cgcggcggcggccctgctgctcgc 184 |||||||||||||||||||||||| Sbjct: 3806828 cgcggcggcggccctgctgctcgc 3806805
>gb|AC097280.8| Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence Length = 129647 Score = 46.1 bits (23), Expect = 0.060 Identities = 23/23 (100%) Strand = Plus / Plus Query: 13 cgtcgcccacactccactccacg 35 ||||||||||||||||||||||| Sbjct: 58334 cgtcgcccacactccactccacg 58356
>ref|XM_542189.2| PREDICTED: Canis familiaris similar to signal peptide peptidase-like 2B isoform 2 (LOC485071), mRNA Length = 2643 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 174 ctgctgctcgcgctgctctgcctggc 199 ||||||||||| |||||||||||||| Sbjct: 1276 ctgctgctcgcactgctctgcctggc 1301
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Minus Query: 124 gcgacaaagcaatggcggccgtcggcaggc 153 ||||||| ||||||||||||| |||||||| Sbjct: 6229396 gcgacaaggcaatggcggccgccggcaggc 6229367
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Plus Query: 162 gcggcggcggccctgctgctcgcgctgctc 191 |||||||||| | ||||||||||||||||| Sbjct: 2066216 gcggcggcgggcgtgctgctcgcgctgctc 2066245
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 ggcggccctgctgctcgcgct 187 ||||||||||||||||||||| Sbjct: 5318653 ggcggccctgctgctcgcgct 5318633
>ref|XM_532375.2| PREDICTED: Canis familiaris similar to TPA regulated locus (LOC475144), mRNA Length = 1509 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 cctgctgctcgcgctgctctg 193 ||||||||||||||||||||| Sbjct: 60 cctgctgctcgcgctgctctg 80
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 0.93 Identities = 24/25 (96%) Strand = Plus / Minus Query: 169 cggccctgctgctcgcgctgctctg 193 ||||| ||||||||||||||||||| Sbjct: 228771 cggccatgctgctcgcgctgctctg 228747
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 gcggcggccctgctgctcgcg 185 ||||||||||||||||||||| Sbjct: 66011 gcggcggccctgctgctcgcg 65991
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 tgccgagcgcggcggcggccc 174 ||||||||||||||||||||| Sbjct: 4118766 tgccgagcgcggcggcggccc 4118786 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 cggggacgtcggcggcgacc 218 |||||||||||||||||||| Sbjct: 5397202 cggggacgtcggcggcgacc 5397183
>gb|AY280500.2| Sandersonia aurantiaca beta-galactosidase (GAL3) mRNA, partial cds Length = 2618 Score = 42.1 bits (21), Expect = 0.93 Identities = 45/53 (84%) Strand = Plus / Plus Query: 228 tccacgagcccgtccggggacagtacgacttcgagggcaggaatgacctggtg 280 ||||||||||| | | |||||||||||| ||| | || ||||| ||||||||| Sbjct: 140 tccacgagcccctacagggacagtacgatttccaagggaggaaggacctggtg 192
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 gcggcggcggccctgctgct 181 |||||||||||||||||||| Sbjct: 556863 gcggcggcggccctgctgct 556882
>gb|DQ213916.1| Taeniopygia guttata clone 0058P0058F05 macrophage migration inhibitory factor (MIF) variant 1-like mRNA, complete sequence Length = 1030 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 agcgcggcggcggccctgctgctc 182 |||||||||||||||| ||||||| Sbjct: 29 agcgcggcggcggccccgctgctc 52
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gccgagcgcggcggcggccc 174 |||||||||||||||||||| Sbjct: 1535263 gccgagcgcggcggcggccc 1535244
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 gcaggctgccgagcgcggcg 167 |||||||||||||||||||| Sbjct: 2146268 gcaggctgccgagcgcggcg 2146249
>ref|XM_530663.1| PREDICTED: Pan troglodytes LOC460813 (LOC460813), mRNA Length = 1057 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gccctgctgctcgcgctgct 190 |||||||||||||||||||| Sbjct: 501 gccctgctgctcgcgctgct 482
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 cggccctgctgctcgcgctg 188 |||||||||||||||||||| Sbjct: 2534797 cggccctgctgctcgcgctg 2534816
>gb|AC026887.9| Homo sapiens chromosome 10 clone RP11-544P1, complete sequence Length = 187495 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 ggccctgctgctcgcgctgctctg 193 |||||||||||||| ||||||||| Sbjct: 133930 ggccctgctgctcgggctgctctg 133907
>gb|AY098636.1| Mus musculus testhymin mRNA, complete cds Length = 6258 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ctgccgagcgcggcggcggc 172 |||||||||||||||||||| Sbjct: 590 ctgccgagcgcggcggcggc 571
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 cggggacgtcggcggcgacc 218 |||||||||||||||||||| Sbjct: 6117 cggggacgtcggcggcgacc 6098
>gb|AY641455.1| Burkholderia glumae DNA binding protein (toxJ), putative transposase, putative outer membrane protein OprM precursor (toxI), probable RND efflux transporter (toxH), probable RND efflux membrane-fusion protein precursor (toxG), hypothetical protein (toxF), LysR type regulatory protein (toxR), putative ubiquinone/menaquinone biosynthesis methyltransferase (toxA), putative GTP cyclohydrolase II (toxB), WD repeat portein (toxC), hypothetical protein (toxD), putative deaminase (toxE), and putative transposase genes, complete cds Length = 16987 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 gcggcggccctgctgctcgc 184 |||||||||||||||||||| Sbjct: 3749 gcggcggccctgctgctcgc 3730
>gb|AC156290.10| Mus musculus 6 BAC RP24-267I24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 144883 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ctgccgagcgcggcggcggc 172 |||||||||||||||||||| Sbjct: 31445 ctgccgagcgcggcggcggc 31426
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 gcggcggccctgctgctcgc 184 |||||||||||||||||||| Sbjct: 72763 gcggcggccctgctgctcgc 72744
>ref|XM_575380.1| PREDICTED: Rattus norvegicus similar to testhymin (LOC500026), mRNA Length = 2369 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ctgccgagcgcggcggcggc 172 |||||||||||||||||||| Sbjct: 212 ctgccgagcgcggcggcggc 193
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 tggcggggacgtcggcggcg 215 |||||||||||||||||||| Sbjct: 4413242 tggcggggacgtcggcggcg 4413261
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 tgccgagcgcggcggcggcc 173 |||||||||||||||||||| Sbjct: 749571 tgccgagcgcggcggcggcc 749590
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 gcggcggccctgctgctcgc 184 |||||||||||||||||||| Sbjct: 3137752 gcggcggccctgctgctcgc 3137733
>gb|AC090053.5| Leishmania major strain Friedlin chromosome Unknown clone P323, complete sequence Length = 66637 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gccctgctgctcgcgctgct 190 |||||||||||||||||||| Sbjct: 25565 gccctgctgctcgcgctgct 25584 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,266,403 Number of Sequences: 3902068 Number of extensions: 2266403 Number of successful extensions: 45563 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43949 Number of HSP's gapped (non-prelim): 1614 length of query: 282 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 260 effective length of database: 17,147,199,772 effective search space: 4458271940720 effective search space used: 4458271940720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)