ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.050
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.050
3gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.050
4gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic ... 42 0.20
5ref|XM_742578.1| Aspergillus fumigatus Af293 hypothetical protei... 40 0.78
6gb|BC113341.1| Bos taurus cDNA clone MGC:138076 IMAGE:8085733, c... 40 0.78
7gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 0.78
8dbj|AP006081.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 0.78
9gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome... 38 3.1
10ref|XM_676768.1| Aspergillus nidulans FGSC A4 hypothetical prote... 38 3.1
11ref|NM_152981.1| Danio rerio metal-regulatory transcription fact... 38 3.1
12gb|AC022389.9| Homo sapiens chromosome 10 clone RP11-124L5, comp... 38 3.1
13gb|AF458116.1| Danio rerio metal-response transcription factor M... 38 3.1
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.1
15dbj|AP000679.7| Homo sapiens genomic DNA, chromosome 11 clone:CM... 38 3.1
16gb|U15787.1|HSRGR4 Human RPE-retinal G protein coupled receptor ... 38 3.1

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.050
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 25      cctcttctccttcctcgagctc 46
               ||||||||||||||||||||||
Sbjct: 6134306 cctcttctccttcctcgagctc 6134285



 Score = 42.1 bits (21), Expect = 0.20
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 24       tcctcttctccttcctcgagc 44
                |||||||||||||||||||||
Sbjct: 34367116 tcctcttctccttcctcgagc 34367096



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.050
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 25      cctcttctccttcctcgagctc 46
               ||||||||||||||||||||||
Sbjct: 6133519 cctcttctccttcctcgagctc 6133498



 Score = 42.1 bits (21), Expect = 0.20
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 24       tcctcttctccttcctcgagc 44
                |||||||||||||||||||||
Sbjct: 34457588 tcctcttctccttcctcgagc 34457568



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>gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090D11,
              complete sequence
          Length = 174865

 Score = 44.1 bits (22), Expect = 0.050
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 25     cctcttctccttcctcgagctc 46
              ||||||||||||||||||||||
Sbjct: 127782 cctcttctccttcctcgagctc 127761



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>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete
             sequence
          Length = 115393

 Score = 42.1 bits (21), Expect = 0.20
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    tcctcttctccttcctcgagc 44
             |||||||||||||||||||||
Sbjct: 82578 tcctcttctccttcctcgagc 82598



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>ref|XM_742578.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g04060) partial
            mRNA
          Length = 2214

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   tcctcttctccttcctcgag 43
            ||||||||||||||||||||
Sbjct: 1325 tcctcttctccttcctcgag 1306



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>gb|BC113341.1| Bos taurus cDNA clone MGC:138076 IMAGE:8085733, complete cds
          Length = 1688

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 24 tcctcttctccttcctcgagctcc 47
          |||||||||||||||||| |||||
Sbjct: 10 tcctcttctccttcctcgggctcc 33



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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 24      tcctcttctccttcctcgagctcc 47
               ||||||||| ||||||||||||||
Sbjct: 3126384 tcctcttcttcttcctcgagctcc 3126361



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>dbj|AP006081.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT32P24, TM0120,
             complete sequence
          Length = 137804

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    acgtcctcttctccttcctc 40
             ||||||||||||||||||||
Sbjct: 11327 acgtcctcttctccttcctc 11308



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>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10,
             complete sequence
          Length = 148373

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 23    gtcctcttctccttcctcgagctccac 49
             |||||| || |||||||||||||||||
Sbjct: 44468 gtcctcatcaccttcctcgagctccac 44494



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>ref|XM_676768.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8591.2), mRNA
          Length = 1137

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 19  caacgtcctcttctccttcctcg 41
           |||| ||||||||||||||||||
Sbjct: 645 caacatcctcttctccttcctcg 667



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>ref|NM_152981.1| Danio rerio metal-regulatory transcription factor 1 (mtf1), mRNA
          Length = 3379

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 22  cgtcctcttctccttcctc 40
           |||||||||||||||||||
Sbjct: 288 cgtcctcttctccttcctc 270



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>gb|AC022389.9| Homo sapiens chromosome 10 clone RP11-124L5, complete sequence
          Length = 198481

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 10     tcctcctcacaacgtcctcttct 32
              ||||||||||||| |||||||||
Sbjct: 111231 tcctcctcacaacctcctcttct 111253



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>gb|AF458116.1| Danio rerio metal-response transcription factor Mtf1 (mtf1) mRNA,
           complete cds
          Length = 3379

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 22  cgtcctcttctccttcctc 40
           |||||||||||||||||||
Sbjct: 288 cgtcctcttctccttcctc 270



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                           
Query: 23       gtcctcttctccttcctcgagctccac 49
                |||||| || |||||||||||||||||
Sbjct: 17051101 gtcctcatcaccttcctcgagctccac 17051127



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>dbj|AP000679.7| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-21E14, complete
             sequence
          Length = 132641

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    cgtcctcttctccttcctc 40
             |||||||||||||||||||
Sbjct: 70439 cgtcctcttctccttcctc 70421



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>gb|U15787.1|HSRGR4 Human RPE-retinal G protein coupled receptor (rgr) gene, exon 4
          Length = 334

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 10 tcctcctcacaacgtcctcttct 32
          ||||||||||||| |||||||||
Sbjct: 62 tcctcctcacaacctcctcttct 84


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 715,092
Number of Sequences: 3902068
Number of extensions: 715092
Number of successful extensions: 66382
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66205
Number of HSP's gapped (non-prelim): 177
length of query: 76
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 55
effective length of database: 17,151,101,840
effective search space: 943310601200
effective search space used: 943310601200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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