Clone Name | bastl10h04 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.050 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 cctcttctccttcctcgagctc 46 |||||||||||||||||||||| Sbjct: 6134306 cctcttctccttcctcgagctc 6134285 Score = 42.1 bits (21), Expect = 0.20 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 tcctcttctccttcctcgagc 44 ||||||||||||||||||||| Sbjct: 34367116 tcctcttctccttcctcgagc 34367096
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.050 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 cctcttctccttcctcgagctc 46 |||||||||||||||||||||| Sbjct: 6133519 cctcttctccttcctcgagctc 6133498 Score = 42.1 bits (21), Expect = 0.20 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 tcctcttctccttcctcgagc 44 ||||||||||||||||||||| Sbjct: 34457588 tcctcttctccttcctcgagc 34457568
>gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090D11, complete sequence Length = 174865 Score = 44.1 bits (22), Expect = 0.050 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 cctcttctccttcctcgagctc 46 |||||||||||||||||||||| Sbjct: 127782 cctcttctccttcctcgagctc 127761
>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete sequence Length = 115393 Score = 42.1 bits (21), Expect = 0.20 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 tcctcttctccttcctcgagc 44 ||||||||||||||||||||| Sbjct: 82578 tcctcttctccttcctcgagc 82598
>ref|XM_742578.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g04060) partial mRNA Length = 2214 Score = 40.1 bits (20), Expect = 0.78 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tcctcttctccttcctcgag 43 |||||||||||||||||||| Sbjct: 1325 tcctcttctccttcctcgag 1306
>gb|BC113341.1| Bos taurus cDNA clone MGC:138076 IMAGE:8085733, complete cds Length = 1688 Score = 40.1 bits (20), Expect = 0.78 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 tcctcttctccttcctcgagctcc 47 |||||||||||||||||| ||||| Sbjct: 10 tcctcttctccttcctcgggctcc 33
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 0.78 Identities = 23/24 (95%) Strand = Plus / Minus Query: 24 tcctcttctccttcctcgagctcc 47 ||||||||| |||||||||||||| Sbjct: 3126384 tcctcttcttcttcctcgagctcc 3126361
>dbj|AP006081.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT32P24, TM0120, complete sequence Length = 137804 Score = 40.1 bits (20), Expect = 0.78 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 acgtcctcttctccttcctc 40 |||||||||||||||||||| Sbjct: 11327 acgtcctcttctccttcctc 11308
>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10, complete sequence Length = 148373 Score = 38.2 bits (19), Expect = 3.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 23 gtcctcttctccttcctcgagctccac 49 |||||| || ||||||||||||||||| Sbjct: 44468 gtcctcatcaccttcctcgagctccac 44494
>ref|XM_676768.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8591.2), mRNA Length = 1137 Score = 38.2 bits (19), Expect = 3.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 19 caacgtcctcttctccttcctcg 41 |||| |||||||||||||||||| Sbjct: 645 caacatcctcttctccttcctcg 667
>ref|NM_152981.1| Danio rerio metal-regulatory transcription factor 1 (mtf1), mRNA Length = 3379 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 cgtcctcttctccttcctc 40 ||||||||||||||||||| Sbjct: 288 cgtcctcttctccttcctc 270
>gb|AC022389.9| Homo sapiens chromosome 10 clone RP11-124L5, complete sequence Length = 198481 Score = 38.2 bits (19), Expect = 3.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 10 tcctcctcacaacgtcctcttct 32 ||||||||||||| ||||||||| Sbjct: 111231 tcctcctcacaacctcctcttct 111253
>gb|AF458116.1| Danio rerio metal-response transcription factor Mtf1 (mtf1) mRNA, complete cds Length = 3379 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 cgtcctcttctccttcctc 40 ||||||||||||||||||| Sbjct: 288 cgtcctcttctccttcctc 270
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 3.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 23 gtcctcttctccttcctcgagctccac 49 |||||| || ||||||||||||||||| Sbjct: 17051101 gtcctcatcaccttcctcgagctccac 17051127
>dbj|AP000679.7| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-21E14, complete sequence Length = 132641 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 cgtcctcttctccttcctc 40 ||||||||||||||||||| Sbjct: 70439 cgtcctcttctccttcctc 70421
>gb|U15787.1|HSRGR4 Human RPE-retinal G protein coupled receptor (rgr) gene, exon 4 Length = 334 Score = 38.2 bits (19), Expect = 3.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 10 tcctcctcacaacgtcctcttct 32 ||||||||||||| ||||||||| Sbjct: 62 tcctcctcacaacctcctcttct 84 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 715,092 Number of Sequences: 3902068 Number of extensions: 715092 Number of successful extensions: 66382 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66205 Number of HSP's gapped (non-prelim): 177 length of query: 76 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 55 effective length of database: 17,151,101,840 effective search space: 943310601200 effective search space used: 943310601200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)