Clone Name | bastl10g08 |
---|---|
Clone Library Name | barley_pub |
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 232 bits (117), Expect = 2e-58 Identities = 117/117 (100%) Strand = Plus / Plus Query: 28 tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 87 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 60 Query: 88 cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcg 144 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcg 117
>gb|AC146383.4| Pan troglodytes BAC clone RP43-125D18 from 7, complete sequence Length = 141329 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 cttcctttcctgatctgccagggc 36 |||||||||||||| ||||||||| Sbjct: 31172 cttcctttcctgatgtgccagggc 31149
>gb|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-15, complete sequence Length = 179757 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 cttcctttcctgatctgccagggc 36 |||||||||||||| ||||||||| Sbjct: 137738 cttcctttcctgatgtgccagggc 137761
>emb|AL356579.24| Human DNA sequence from clone RP11-593A16 on chromosome 6 Contains the 5' end of the gene for KIAA1798 protein and a CpG island, complete sequence Length = 172816 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 104 gcaatagccaacaccgtag 122 ||||||||||||||||||| Sbjct: 115643 gcaatagccaacaccgtag 115661
>emb|AL356275.20| Human DNA sequence from clone RP11-328D5 on chromosome 1 Contains the 5' end of a novel gene, a novel gene, the CD34 gene for CD34 antigen and the 3' end of the PLXNA2 gene for plexin A2, complete sequence Length = 198906 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 tgcacagtctagctaggtc 60 ||||||||||||||||||| Sbjct: 25906 tgcacagtctagctaggtc 25924
>gb|AC151284.3| Mus musculus BAC clone RP23-391C14 from chromosome 17, complete sequence Length = 202363 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 ctgatctgccagggcaggg 40 ||||||||||||||||||| Sbjct: 46534 ctgatctgccagggcaggg 46516
>gb|AC084393.20| Homo sapiens 12q BAC RP11-453E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182489 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 tgcacagtctagctaggtc 60 ||||||||||||||||||| Sbjct: 138866 tgcacagtctagctaggtc 138884
>gb|AC022101.4| Homo sapiens chromosome 5 clone CTC-210G5, complete sequence Length = 173691 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 ttcctttcctgatctgcca 32 ||||||||||||||||||| Sbjct: 20046 ttcctttcctgatctgcca 20064
>gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosome 13, complete sequence Length = 192299 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 tcacctcttcctttcctga 25 ||||||||||||||||||| Sbjct: 139589 tcacctcttcctttcctga 139607
>gb|AC016722.9| Homo sapiens BAC clone RP11-333I13 from 2, complete sequence Length = 149995 Score = 38.2 bits (19), Expect = 6.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 16 cctttcctgatctgccagggcag 38 ||||||||| ||||||||||||| Sbjct: 88690 cctttcctgctctgccagggcag 88712
>gb|AF167304.1|AF167301S4 Homo sapiens synuclein alpha interacting protein (SNCAIP) gene, exon 5 Length = 4861 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 ttcctttcctgatctgcca 32 ||||||||||||||||||| Sbjct: 548 ttcctttcctgatctgcca 566
>gb|AY095345.1| Papio anubis insulin-like growth factor binding protein-1 (IGFBP-1) gene, partial cds Length = 3886 Score = 38.2 bits (19), Expect = 6.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 22 ctgatctgccagggcagggttgc 44 |||| |||||||||||||||||| Sbjct: 443 ctgacctgccagggcagggttgc 465
>gb|AC151264.2| Mus musculus BAC clone RP24-347M6 from 17, complete sequence Length = 153677 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 ctgatctgccagggcaggg 40 ||||||||||||||||||| Sbjct: 120690 ctgatctgccagggcaggg 120672
>gb|AC117480.9| Homo sapiens 3 BAC RP11-491D10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115257 Score = 38.2 bits (19), Expect = 6.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 4 acatcacctcttcctttcctgat 26 |||||||||||||| |||||||| Sbjct: 27792 acatcacctcttccattcctgat 27814
>emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chromosome 13, complete sequence Length = 219145 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 tcacctcttcctttcctga 25 ||||||||||||||||||| Sbjct: 106322 tcacctcttcctttcctga 106340
>emb|AL035091.2|HS88L2 Human DNA sequence from clone XX-D88L2 on chromosome 1q32.2-32.3, complete sequence Length = 160771 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 tgcacagtctagctaggtc 60 ||||||||||||||||||| Sbjct: 24021 tgcacagtctagctaggtc 24039 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 879,229 Number of Sequences: 3902068 Number of extensions: 879229 Number of successful extensions: 61333 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61308 Number of HSP's gapped (non-prelim): 25 length of query: 144 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 123 effective length of database: 17,151,101,840 effective search space: 2109585526320 effective search space used: 2109585526320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)