Clone Name | bastl10g06 |
---|---|
Clone Library Name | barley_pub |
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 436 bits (220), Expect = e-119 Identities = 220/220 (100%) Strand = Plus / Plus Query: 37 tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 96 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 60 Query: 97 cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcgacc 156 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcgacc 120 Query: 157 aagccgctagtcgggggcgcgtgtgccgcgccgtcgtcgtcggcccggcggaggacgttc 216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagccgctagtcgggggcgcgtgtgccgcgccgtcgtcgtcggcccggcggaggacgttc 180 Query: 217 gtggtgcccgaggctcgccggaaaccaggcaatggccgcc 256 |||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gtggtgcccgaggctcgccggaaaccaggcaatggccgcc 220
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 0.84 Identities = 27/29 (93%) Strand = Plus / Plus Query: 170 ggggcgcgtgtgccgcgccgtcgtcgtcg 198 |||||||||||||||||||| || ||||| Sbjct: 996213 ggggcgcgtgtgccgcgccggcgccgtcg 996241
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 ccgcgccgtcgtcgtcggccc 202 ||||||||||||||||||||| Sbjct: 11464690 ccgcgccgtcgtcgtcggccc 11464670
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 0.84 Identities = 27/29 (93%) Strand = Plus / Plus Query: 170 ggggcgcgtgtgccgcgccgtcgtcgtcg 198 |||||||||||||||||||| || ||||| Sbjct: 2313682 ggggcgcgtgtgccgcgccggcgccgtcg 2313710
>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042L15, from chromosome 3, complete sequence Length = 172475 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 ccgcgccgtcgtcgtcggccc 202 ||||||||||||||||||||| Sbjct: 15262 ccgcgccgtcgtcgtcggccc 15242
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 0.84 Identities = 27/29 (93%) Strand = Plus / Plus Query: 170 ggggcgcgtgtgccgcgccgtcgtcgtcg 198 |||||||||||||||||||| || ||||| Sbjct: 1861233 ggggcgcgtgtgccgcgccggcgccgtcg 1861261
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 ccgcgccgtcgtcgtcggccc 202 ||||||||||||||||||||| Sbjct: 11461453 ccgcgccgtcgtcgtcggccc 11461433
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 gccgcgccgtcgtcgtcggcc 201 ||||||||||||||||||||| Sbjct: 293702 gccgcgccgtcgtcgtcggcc 293682
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 gccgcgccgtcgtcgtcggcc 201 ||||||||||||||||||||| Sbjct: 2096821 gccgcgccgtcgtcgtcggcc 2096841 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 ccgcgccgtcgtcgtcggcc 201 |||||||||||||||||||| Sbjct: 4599530 ccgcgccgtcgtcgtcggcc 4599549
>gb|AC146383.4| Pan troglodytes BAC clone RP43-125D18 from 7, complete sequence Length = 141329 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 cttcctttcctgatctgccagggc 45 |||||||||||||| ||||||||| Sbjct: 31172 cttcctttcctgatgtgccagggc 31149
>gb|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-15, complete sequence Length = 179757 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 cttcctttcctgatctgccagggc 45 |||||||||||||| ||||||||| Sbjct: 137738 cttcctttcctgatgtgccagggc 137761
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds Length = 157237 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 gtgccgcgccgtcgtcgtcg 198 |||||||||||||||||||| Sbjct: 4453 gtgccgcgccgtcgtcgtcg 4472 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,492,352 Number of Sequences: 3902068 Number of extensions: 1492352 Number of successful extensions: 33755 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33358 Number of HSP's gapped (non-prelim): 397 length of query: 256 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 234 effective length of database: 17,147,199,772 effective search space: 4012444746648 effective search space used: 4012444746648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)