ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_191392.1| Oryza sativa (japonica cultivar-group), predic... 50 0.005
2dbj|AK122168.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
3dbj|AK121269.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
4gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 46 0.077
5gb|AY249022.1| Hypocrea jecorina QM9414 galactokinase (gal1) gen... 44 0.30
6gb|AC099566.2| Homo sapiens chromosome 1 clone RP4-798D13, compl... 42 1.2
7gb|AE005943.1| Caulobacter crescentus CB15 section 269 of 359 of... 40 4.8
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
9gb|AC009230.3| Homo sapiens BAC clone RP11-343B21 from 2, comple... 40 4.8
10dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
11dbj|AP003377.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
12emb|CR759910.13| Zebrafish DNA sequence from clone DKEYP-79C4 in... 40 4.8
13gb|AE000512.1| Thermotoga maritima MSB8, complete genome 40 4.8

>ref|NM_191392.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3636

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 208 gtgcttgaggacttccgcgcctccgacgcccacgagtacacattcgaacctgg 260
           ||||| ||||||||||  |||||||||||||| | ||||| ||| ||||||||
Sbjct: 406 gtgctcgaggacttccaagcctccgacgcccaggtgtacaaatttgaacctgg 458



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>dbj|AK122168.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148A12, full
           insert sequence
          Length = 4471

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 208 gtgcttgaggacttccgcgcctccgacgcccacgagtacacattcgaacctgg 260
           ||||| ||||||||||  |||||||||||||| | ||||| ||| ||||||||
Sbjct: 336 gtgctcgaggacttccaagcctccgacgcccaggtgtacaaatttgaacctgg 388



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>dbj|AK121269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K13, full
           insert sequence
          Length = 5243

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 208 gtgcttgaggacttccgcgcctccgacgcccacgagtacacattcgaacctgg 260
           ||||| ||||||||||  |||||||||||||| | ||||| ||| ||||||||
Sbjct: 336 gtgctcgaggacttccaagcctccgacgcccaggtgtacaaatttgaacctgg 388



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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 154    accgccagcgccctggccgccat 176
              |||||||||||||||||||||||
Sbjct: 773813 accgccagcgccctggccgccat 773835



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>gb|AY249022.1| Hypocrea jecorina QM9414 galactokinase (gal1) gene, complete cds
          Length = 3571

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 152  tcaccgccagcgccctggccgccatg 177
            ||||||||||||||||||||| ||||
Sbjct: 1504 tcaccgccagcgccctggccgtcatg 1529



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>gb|AC099566.2| Homo sapiens chromosome 1 clone RP4-798D13, complete sequence
          Length = 130325

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 307   atgggcatgtcatcaaagagt 327
             |||||||||||||||||||||
Sbjct: 57502 atgggcatgtcatcaaagagt 57482



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>gb|AE005943.1| Caulobacter crescentus CB15 section 269 of 359 of the complete genome
          Length = 10106

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  ccgccagcgccctggccgcc 174
            ||||||||||||||||||||
Sbjct: 7294 ccgccagcgccctggccgcc 7275



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 208      gtgcttgaggacttccgcgcctccgacgccca 239
                ||||| ||||||||||  ||||||||||||||
Sbjct: 32344105 gtgctcgaggacttccaagcctccgacgccca 32344136



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>gb|AC009230.3| Homo sapiens BAC clone RP11-343B21 from 2, complete sequence
          Length = 173993

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    agagtaaagggaatggggga 342
              ||||||||||||||||||||
Sbjct: 153839 agagtaaagggaatggggga 153858



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>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1143G03
          Length = 137770

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 208   gtgcttgaggacttccgcgcctccgacgccca 239
             ||||| ||||||||||  ||||||||||||||
Sbjct: 23602 gtgctcgaggacttccaagcctccgacgccca 23633



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>dbj|AP003377.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0053G03
          Length = 101901

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 208   gtgcttgaggacttccgcgcctccgacgccca 239
             ||||| ||||||||||  ||||||||||||||
Sbjct: 76390 gtgctcgaggacttccaagcctccgacgccca 76421



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>emb|CR759910.13| Zebrafish DNA sequence from clone DKEYP-79C4 in linkage group 19,
             complete sequence
          Length = 217814

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   agagtaaagggaatggggga 342
             ||||||||||||||||||||
Sbjct: 97042 agagtaaagggaatggggga 97061



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>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 303     aaggatgggcatgtcatcaaagag 326
               ||||||||||||||| ||||||||
Sbjct: 1584030 aaggatgggcatgtcttcaaagag 1584053


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,404,085
Number of Sequences: 3902068
Number of extensions: 1404085
Number of successful extensions: 28127
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28076
Number of HSP's gapped (non-prelim): 51
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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