Clone Name | bastl10g04 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_191392.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3636 Score = 50.1 bits (25), Expect = 0.005 Identities = 46/53 (86%) Strand = Plus / Plus Query: 208 gtgcttgaggacttccgcgcctccgacgcccacgagtacacattcgaacctgg 260 ||||| |||||||||| |||||||||||||| | ||||| ||| |||||||| Sbjct: 406 gtgctcgaggacttccaagcctccgacgcccaggtgtacaaatttgaacctgg 458
>dbj|AK122168.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148A12, full insert sequence Length = 4471 Score = 50.1 bits (25), Expect = 0.005 Identities = 46/53 (86%) Strand = Plus / Plus Query: 208 gtgcttgaggacttccgcgcctccgacgcccacgagtacacattcgaacctgg 260 ||||| |||||||||| |||||||||||||| | ||||| ||| |||||||| Sbjct: 336 gtgctcgaggacttccaagcctccgacgcccaggtgtacaaatttgaacctgg 388
>dbj|AK121269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K13, full insert sequence Length = 5243 Score = 50.1 bits (25), Expect = 0.005 Identities = 46/53 (86%) Strand = Plus / Plus Query: 208 gtgcttgaggacttccgcgcctccgacgcccacgagtacacattcgaacctgg 260 ||||| |||||||||| |||||||||||||| | ||||| ||| |||||||| Sbjct: 336 gtgctcgaggacttccaagcctccgacgcccaggtgtacaaatttgaacctgg 388
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Plus Query: 154 accgccagcgccctggccgccat 176 ||||||||||||||||||||||| Sbjct: 773813 accgccagcgccctggccgccat 773835
>gb|AY249022.1| Hypocrea jecorina QM9414 galactokinase (gal1) gene, complete cds Length = 3571 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 152 tcaccgccagcgccctggccgccatg 177 ||||||||||||||||||||| |||| Sbjct: 1504 tcaccgccagcgccctggccgtcatg 1529
>gb|AC099566.2| Homo sapiens chromosome 1 clone RP4-798D13, complete sequence Length = 130325 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 atgggcatgtcatcaaagagt 327 ||||||||||||||||||||| Sbjct: 57502 atgggcatgtcatcaaagagt 57482
>gb|AE005943.1| Caulobacter crescentus CB15 section 269 of 359 of the complete genome Length = 10106 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 ccgccagcgccctggccgcc 174 |||||||||||||||||||| Sbjct: 7294 ccgccagcgccctggccgcc 7275
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 208 gtgcttgaggacttccgcgcctccgacgccca 239 ||||| |||||||||| |||||||||||||| Sbjct: 32344105 gtgctcgaggacttccaagcctccgacgccca 32344136
>gb|AC009230.3| Homo sapiens BAC clone RP11-343B21 from 2, complete sequence Length = 173993 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 agagtaaagggaatggggga 342 |||||||||||||||||||| Sbjct: 153839 agagtaaagggaatggggga 153858
>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1143G03 Length = 137770 Score = 40.1 bits (20), Expect = 4.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 208 gtgcttgaggacttccgcgcctccgacgccca 239 ||||| |||||||||| |||||||||||||| Sbjct: 23602 gtgctcgaggacttccaagcctccgacgccca 23633
>dbj|AP003377.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0053G03 Length = 101901 Score = 40.1 bits (20), Expect = 4.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 208 gtgcttgaggacttccgcgcctccgacgccca 239 ||||| |||||||||| |||||||||||||| Sbjct: 76390 gtgctcgaggacttccaagcctccgacgccca 76421
>emb|CR759910.13| Zebrafish DNA sequence from clone DKEYP-79C4 in linkage group 19, complete sequence Length = 217814 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 agagtaaagggaatggggga 342 |||||||||||||||||||| Sbjct: 97042 agagtaaagggaatggggga 97061
>gb|AE000512.1| Thermotoga maritima MSB8, complete genome Length = 1860725 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 aaggatgggcatgtcatcaaagag 326 ||||||||||||||| |||||||| Sbjct: 1584030 aaggatgggcatgtcttcaaagag 1584053 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,404,085 Number of Sequences: 3902068 Number of extensions: 1404085 Number of successful extensions: 28127 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28076 Number of HSP's gapped (non-prelim): 51 length of query: 358 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 336 effective length of database: 17,147,199,772 effective search space: 5761459123392 effective search space used: 5761459123392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)