ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
2dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
3dbj|AK099801.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
4dbj|AK102882.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-06
5gb|AC122383.4| Mus musculus BAC clone RP23-479O8 from chromosome... 42 0.88
6ref|XM_949170.1| Theileria annulata strain Ankara hypothetical p... 42 0.88
7gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 0.88
8gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 3.5
9gb|AC104881.9| Mus musculus chromosome 18, clone RP23-244A24, co... 40 3.5
10emb|BX883047.1| Rattus norvegicus chromosome 20, major histocomp... 40 3.5
11emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genom... 40 3.5
12emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 3.5
13gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 3.5
14gb|AC158772.5| Mus musculus chromosome 18, clone RP23-291M14, co... 40 3.5
15dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 3.5 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                          
Query: 32       aaaatggcgaaatcgccggccgatcggagcccaatctgagcc 73
                ||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 36272308 aaaatggcggaatcgccggctgatcggagcccaatctgagcc 36272349



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 137      gaaatggccgccactgtcccgatcgggctcgcggcgctcgattcggtggtgttctggccc 196
                |||||||| ||||| | |||||||||||| |||  || ||||||||||||| ||||||| 
Sbjct: 36272413 gaaatggcggccaccgccccgatcgggcttgcgaagcgcgattcggtggtgctctggcct 36272472

                     
Query: 197      ggggg 201
                |||||
Sbjct: 36272473 ggggg 36272477
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>dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0446B05
          Length = 149145

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                       
Query: 32    aaaatggcgaaatcgccggccgatcggagcccaatctgagcc 73
             ||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 22185 aaaatggcggaatcgccggctgatcggagcccaatctgagcc 22226



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 137   gaaatggccgccactgtcccgatcgggctcgcggcgctcgattcggtggtgttctggccc 196
             |||||||| ||||| | |||||||||||| |||  || ||||||||||||| ||||||| 
Sbjct: 22290 gaaatggcggccaccgccccgatcgggcttgcgaagcgcgattcggtggtgctctggcct 22349

                  
Query: 197   ggggg 201
             |||||
Sbjct: 22350 ggggg 22354
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>dbj|AK099801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098A15, full
           insert sequence
          Length = 3958

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                     
Query: 32  aaaatggcgaaatcgccggccgatcggagcccaatctgagcc 73
           ||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 98  aaaatggcggaatcgccggctgatcggagcccaatctgagcc 139



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 137 gaaatggccgccactgtcccgatcgggctcgcggcgctcgattcggtggtgttctggccc 196
           |||||||| ||||| | |||||||||||| |||  || ||||||||||||| ||||||| 
Sbjct: 203 gaaatggcggccaccgccccgatcgggcttgcgaagcgcgattcggtggtgctctggcct 262

                
Query: 197 ggggg 201
           |||||
Sbjct: 263 ggggg 267
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>dbj|AK102882.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112I24, full
           insert sequence
          Length = 2841

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 36  tggcgaaatcgccggccgatcggagcccaatctgagcc 73
           ||||| |||||||||| |||||||||||||||||||||
Sbjct: 98  tggcggaatcgccggctgatcggagcccaatctgagcc 135



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 137 gaaatggccgccactgtcccgatcgggctcgcggcgctcgattcggtggtgttctggccc 196
           |||||||| ||||| | |||||||||||| |||  || ||||||||||||| ||||||| 
Sbjct: 199 gaaatggcggccaccgccccgatcgggcttgcgaagcgcgattcggtggtgctctggcct 258

                
Query: 197 ggggg 201
           |||||
Sbjct: 259 ggggg 263
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>gb|AC122383.4| Mus musculus BAC clone RP23-479O8 from chromosome 7, complete sequence
          Length = 196195

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 199   gggacctgagagctgcaggtt 219
             |||||||||||||||||||||
Sbjct: 46760 gggacctgagagctgcaggtt 46740
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>ref|XM_949170.1| Theileria annulata strain Ankara hypothetical protein (TA20520)
          partial mRNA
          Length = 648

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tttggttccccaaaatggcga 41
          |||||||||||||||||||||
Sbjct: 66 tttggttccccaaaatggcga 86
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 155     ccgatcgggctcgcggcgctc 175
               |||||||||||||||||||||
Sbjct: 1838408 ccgatcgggctcgcggcgctc 1838388
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 155     ccgatcgggctcgcggcgct 174
               ||||||||||||||||||||
Sbjct: 2947972 ccgatcgggctcgcggcgct 2947991
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>gb|AC104881.9| Mus musculus chromosome 18, clone RP23-244A24, complete sequence
          Length = 184796

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    agagctgcaggttttctgat 226
              ||||||||||||||||||||
Sbjct: 119850 agagctgcaggttttctgat 119869
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>emb|BX883047.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 6/11
          Length = 349571

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     aagccccgggtttggttccc 30
              ||||||||||||||||||||
Sbjct: 226776 aagccccgggtttggttccc 226757
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>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16
          Length = 349746

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    cccgatcgggctcgcggcgc 173
              ||||||||||||||||||||
Sbjct: 299705 cccgatcgggctcgcggcgc 299686
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 155     ccgatcgggctcgcggcgct 174
               ||||||||||||||||||||
Sbjct: 1126501 ccgatcgggctcgcggcgct 1126520
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    ccgatcgggctcgcggcgct 174
              ||||||||||||||||||||
Sbjct: 721151 ccgatcgggctcgcggcgct 721170
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>gb|AC158772.5| Mus musculus chromosome 18, clone RP23-291M14, complete sequence
          Length = 198851

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  agagctgcaggttttctgat 226
            ||||||||||||||||||||
Sbjct: 3200 agagctgcaggttttctgat 3219
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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     gccgccactgtcccgatcgg 162
               ||||||||||||||||||||
Sbjct: 3679437 gccgccactgtcccgatcgg 3679456


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,440,721
Number of Sequences: 3902068
Number of extensions: 1440721
Number of successful extensions: 26729
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26332
Number of HSP's gapped (non-prelim): 397
length of query: 267
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 245
effective length of database: 17,147,199,772
effective search space: 4201063944140
effective search space used: 4201063944140
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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