ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CLC11_MOUSE (O88200) C-type lectin domain family 11 member A pre... 30 1.5
2Y1039_PYRHO (O58758) Hypothetical ABC transporter extracellular-... 29 2.6
3CLC11_HUMAN (Q9Y240) C-type lectin domain family 11 member A pre... 29 2.6
4RS5_GLOVI (Q7NEG9) 30S ribosomal protein S5 29 3.4
5TSP4_RAT (P49744) Thrombospondin-4 precursor 28 4.5
6PCB_PRODI (Q6Q972) Chlorophyll a/b light-harvesting protein pcb 28 5.8
7METK_TREPA (O83772) S-adenosylmethionine synthetase (EC 2.5.1.6)... 27 9.9

>CLC11_MOUSE (O88200) C-type lectin domain family 11 member A precursor (Stem|
           cell growth factor) (Lymphocyte secreted C-type lectin)
          Length = 328

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 104 GRRGMGREWLAGHGGGEKEDRD 39
           G RG GREW  G GG  +E+R+
Sbjct: 21  GARGPGREWEGGWGGALEEERE 42



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>Y1039_PYRHO (O58758) Hypothetical ABC transporter extracellular-binding protein|
           PH1039 precursor
          Length = 420

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 161 RAPRKAGDESHCPPSRWSRRLVVAFGG-ELLRKATKGSRFGENPQVR 298
           +AP  +GD    P S  +   ++ FGG +L  K  KG    E+PQVR
Sbjct: 197 KAPIVSGDSVGWPLSDVTEHFILTFGGKDLQLKLIKGEVKWEDPQVR 243



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>CLC11_HUMAN (Q9Y240) C-type lectin domain family 11 member A precursor (Stem|
           cell growth factor) (Lymphocyte secreted C-type lectin)
           (p47) (C-type lectin superfamily member 3)
          Length = 323

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 104 GRRGMGREWLAGHGGGEKEDRD 39
           G RG  REW  G GG ++E+R+
Sbjct: 21  GARGAEREWEGGWGGAQEEERE 42



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>RS5_GLOVI (Q7NEG9) 30S ribosomal protein S5|
          Length = 223

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 122 PRRISVGRRGMGREWLAGHGGGEKEDRDGADVD 24
           P R S G R  GR   AG GGG+K +R  A+ +
Sbjct: 33  PDRESGGERRRGRGRGAGRGGGDKAERAQAETE 65



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>TSP4_RAT (P49744) Thrombospondin-4 precursor|
          Length = 980

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -3

Query: 282 SPNLEPFVALRSSSPPKATTRRRDQRLGGQCDSSPAFLGAR 160
           SP     V +   +PP   TRR        CDSSP F G R
Sbjct: 286 SPTPNTLVPIAPPAPPTRPTRR--------CDSSPCFRGVR 318



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>PCB_PRODI (Q6Q972) Chlorophyll a/b light-harvesting protein pcb|
          Length = 350

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 194 CPPSRWSRRLVVAFGGELLRKATKG 268
           CPP +W++RL++  G  LL  A  G
Sbjct: 225 CPPFKWAQRLIIYSGEGLLAYALGG 249



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>METK_TREPA (O83772) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase) (MAT)
          Length = 396

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 95  GMGREWLAGHGGGEKEDRDGADVDRSTA 12
           GMGR     HGGG    +D + VDRS A
Sbjct: 258 GMGR-----HGGGSFSGKDASKVDRSAA 280


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,723,489
Number of Sequences: 219361
Number of extensions: 456843
Number of successful extensions: 1593
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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