>OC17_CHICK (Q9PRS8) Ovocleidin-17 (OC-17)|
          Length = 142

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = -3

Query: 162 GERGREWSSWLVSRAPLWLAGERARADGRCCRLSDSE*PYGW 37
           G R   WS     R   W    +AR  GRC  L D E    W
Sbjct: 84  GSRSWRWSDGTAPRFASWHRTAKARRGGRCAALRDEEAFTSW 125

>VATB_METKA (Q8TUT0) V-type ATP synthase beta chain (EC 3.6.3.14) (V-type|
           ATPase subunit B) [Contains: Mka atpB intein]
          Length = 990

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = -2

Query: 259 GRLPREKRRAYGVRSSR-------GAVATGGQRSEARLNGRAREGVEFLVG 128
           GRL RE RR YGVR+S          + +G +R+  RL     E +E +VG
Sbjct: 672 GRLLREVRRKYGVRASDLGSSSTISQIESGERRATRRLALEIVERLEEVVG 722

>TRUA_PHOPR (Q6LNU5) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 261

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 204 LLRLVGSGVKRALMGERGREWSSWLVSRAPLWLAGERARADG 79
           ++R +   + R   G+   EW  W++ +    +AGE A+A G
Sbjct: 194 MVRNIAGSLIRVGRGQETPEWMKWVLEQKDRRVAGETAKAAG 235

>TRUA_VIBVY (Q7M7J4) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 264

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 162 GERGREWSSWLVSRAPLWLAGERARADG 79
           GE+  EW  WL+      LAG  A+A+G
Sbjct: 208 GEQDPEWIKWLLEAKDRKLAGPTAKAEG 235

>TRUA_VIBVU (Q8CWK3) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 264

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 162 GERGREWSSWLVSRAPLWLAGERARADG 79
           GE+  EW  WL+      LAG  A+A+G
Sbjct: 208 GEQDPEWIKWLLEAKDRKLAGPTAKAEG 235

>BCSC_SALTY (Q8ZLB8) Cellulose synthase operon protein C|
          Length = 1143

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = -3

Query: 177 KRALMGERGREWSSWLVSRAPLWLAGERARADGRCCRL-----SDSE*PYGWGGGVAG 19
           +R L  + G  W ++ +SR  LW AG+ A+AD +   L     +D E  Y +G  ++G
Sbjct: 471 RRRLALDPGSVWVTYRLSR-DLWQAGQHAQADAQMRSLAQQKPNDPEQVYAYGLYLSG 527

>AROC_PROAC (Q6A8I4) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 398

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
 Frame = -2

Query: 232 AYGVRSSRGAVATGGQRSEARLNG-----RAREGVEFLVGF 125
           AYG+ +  G+ + G +R +ARL G     +A +GVEF  GF
Sbjct: 227 AYGLPAGLGSHSQGDRRLDARLAGALMGIQAIKGVEFGDGF 267

>VIT1_PERAM (Q9U8M0) Vitellogenin 1 precursor (Vg-1)|
          Length = 1896

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 289  ESPSGQLHLRGRLPREKRRAYGVRSSRGAVA 197
            + PSG L ++G L + + R   +RS+  A+A
Sbjct: 1346 DKPSGNLRIKGELQQSEERRNAIRSTPAALA 1376

>TRUA_VIBPA (Q87MP1) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 264

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 204 LLRLVGSGVKRALMGERGREWSSWLVSRAPLWLAGERARADG 79
           ++R +   + +   GE   EW  WL+      LAG  A+A+G
Sbjct: 194 MVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATAKAEG 235

>ISPD_GEOSL (Q746Z9) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase|
           (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol
           synthase) (MEP cytidylyltransferase) (MCT)
          Length = 232

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 229 YGVRSSRGAVATGGQRSEARLNG-RAREG 146
           YG    RG VA G +R  + LNG RA EG
Sbjct: 69  YGFTKVRGIVAGGAERQHSVLNGLRAMEG 97

>GLGC_SYNY3 (P52415) Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)|
           (ADP-glucose synthase) (ADP-glucose pyrophosphorylase)
           (ADPGlc PPase)
          Length = 439

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 267 IYGGDFRERRGERTACEARVALLRLVGSG--VKRALMGERGR 148
           + G DF E   ER   +AR  +   +GSG  ++RA++ +  R
Sbjct: 354 VMGNDFYESSSERDTLKARGEIAAGIGSGTTIRRAIIDKNAR 395

>TRUA_VIBF1 (Q5E455) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 262

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 162 GERGREWSSWLVSRAPLWLAGERARADGRCCRLSDSE*PYGW 37
           G++  EW  WL+      LAG  A+A+G    L D + P  W
Sbjct: 208 GKQKPEWIKWLLEAKDRKLAGATAKAEG--LYLVDVDYPLEW 247

>IF2_ZYMMO (Q5NQ27) Translation initiation factor IF-2|
          Length = 989

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 119 ARETNQELHSLPRSPIKARFTPLPTSRNSATR 214
           A +  +E    PRSP   RFTP+   R  A R
Sbjct: 317 APKAREERSESPRSPAPRRFTPVSPPRREAPR 348

>NPHP3_MOUSE (Q7TNH6) Nephrocystin-3|
          Length = 1324

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 261 GGDFRERRGERTACEARVALLRLVGSGVKRALMGERGREWSSWLV 127
           GG+  E   +   C+  V+L +LV   V+ ++  +R +EW + ++
Sbjct: 723 GGNVAETLRQCLQCQDTVSLYKLVLHHVRESMPSDRDKEWMTQIL 767


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.128    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,149,602
Number of Sequences: 219361
Number of extensions: 648093
Number of successful extensions: 2360
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2359
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)