ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 36 6.9
2gb|AC166072.2| Mus musculus BAC clone RP23-226J22 from chromosom... 36 6.9
3gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare str... 36 6.9
4emb|AL589932.8| Human DNA sequence from clone RP11-200E19 on chr... 36 6.9
5gb|AC159255.3| Mus musculus BAC clone RP24-89C11 from chromosome... 36 6.9
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 36 6.9
7dbj|AB012807.2| Mus musculus Ugcg gene for UDP-glucose ceramide ... 36 6.9
8dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 36 6.9
9emb|AL954387.17| Zebrafish DNA sequence from clone CH211-288B20 ... 36 6.9
10emb|AL808112.34| Mouse DNA sequence from clone RP23-57N22 on chr... 36 6.9
11dbj|AK113242.1| Ciona intestinalis cDNA, clone:ciad019c13, full ... 36 6.9

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 36.2 bits (18), Expect = 6.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 32       cggaggagccagtccacc 49
                ||||||||||||||||||
Sbjct: 10739070 cggaggagccagtccacc 10739053



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>gb|AC166072.2| Mus musculus BAC clone RP23-226J22 from chromosome 3, complete sequence
          Length = 221724

 Score = 36.2 bits (18), Expect = 6.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 9      tcgggggagcttcaaccc 26
              ||||||||||||||||||
Sbjct: 141100 tcgggggagcttcaaccc 141117



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>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0032G21, from chromosome 3, complete sequence
          Length = 187621

 Score = 36.2 bits (18), Expect = 6.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 32     cggaggagccagtccacc 49
              ||||||||||||||||||
Sbjct: 155984 cggaggagccagtccacc 155967



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>emb|AL589932.8| Human DNA sequence from clone RP11-200E19 on chromosome 6, complete
             sequence
          Length = 37752

 Score = 36.2 bits (18), Expect = 6.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 34    gaggagccagtccaccct 51
             ||||||||||||||||||
Sbjct: 15565 gaggagccagtccaccct 15548



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>gb|AC159255.3| Mus musculus BAC clone RP24-89C11 from chromosome 3, complete sequence
          Length = 216011

 Score = 36.2 bits (18), Expect = 6.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     tcgggggagcttcaaccc 26
             ||||||||||||||||||
Sbjct: 30790 tcgggggagcttcaaccc 30807



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 36.2 bits (18), Expect = 6.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 32       cggaggagccagtccacc 49
                ||||||||||||||||||
Sbjct: 10737171 cggaggagccagtccacc 10737154



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>dbj|AB012807.2| Mus musculus Ugcg gene for UDP-glucose ceramide
          glucosyltransferase, complete cds
          Length = 3117

 Score = 36.2 bits (18), Expect = 6.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 25 ccaaatccggaggagcca 42
          ||||||||||||||||||
Sbjct: 82 ccaaatccggaggagcca 65



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 36.2 bits (18), Expect = 6.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 1       gcgccgaatcgggggagc 18
               ||||||||||||||||||
Sbjct: 2854124 gcgccgaatcgggggagc 2854107



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>emb|AL954387.17| Zebrafish DNA sequence from clone CH211-288B20 in linkage group 18,
             complete sequence
          Length = 125744

 Score = 36.2 bits (18), Expect = 6.9
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 10    cgggggagcttcaacccaaatc 31
             |||||||||||||| |||||||
Sbjct: 52121 cgggggagcttcaaaccaaatc 52100



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>emb|AL808112.34| Mouse DNA sequence from clone RP23-57N22 on chromosome 4, complete
             sequence
          Length = 236158

 Score = 36.2 bits (18), Expect = 6.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 25    ccaaatccggaggagcca 42
             ||||||||||||||||||
Sbjct: 73296 ccaaatccggaggagcca 73279



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>dbj|AK113242.1| Ciona intestinalis cDNA, clone:ciad019c13, full insert sequence
          Length = 1378

 Score = 36.2 bits (18), Expect = 6.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 15  gagcttcaacccaaatcc 32
           ||||||||||||||||||
Sbjct: 876 gagcttcaacccaaatcc 859


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 228,186
Number of Sequences: 3902068
Number of extensions: 228186
Number of successful extensions: 54297
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54220
Number of HSP's gapped (non-prelim): 77
length of query: 51
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 31
effective length of database: 17,155,003,908
effective search space: 531805121148
effective search space used: 531805121148
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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