>KAS2_STRVN (P16541) Granaticin polyketide putative beta-ketoacyl synthase 2|
           (EC 2.3.1.-) (ORF2)
          Length = 415

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 291 YGDGGCLVSAPAELSGMFCRGGGP 362
           +G  G  V+AP  L+G  C GGGP
Sbjct: 320 FGPRGVPVTAPKALTGRLCAGGGP 343

>EBA3_FLAME (P36913) Endo-beta-N-acetylglucosaminidase F3 precursor (EC|
           3.2.1.96) (Mannosyl-glycoprotein
           endo-beta-N-acetyl-glucosaminidase F3)
           (Di-N-acetylchitobiosyl beta-N-acetylglucosaminidase F3)
           (Endoglycosidase F3)
          Length = 329

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 295 EMAGASSLPRPSFPGCSAAAADRWFSSGSA 384
           E +GA   P P+FPG +A   + W+S   A
Sbjct: 167 EHSGAKPNPIPTFPGYAATGYNGWYSGSMA 196

>DNLI_STRCO (Q9FCB1) Probable DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide|
           synthase [ATP])
          Length = 512

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 389 QRALPLLNHRSAAAAEHPGKLGRGRDEAPAISVRVE 282
           Q  LP+L H +++ AE  GKLG    E     +RV+
Sbjct: 182 QPVLPMLAHSASSVAEAVGKLGAAAVEEKLDGIRVQ 217

>GBF3_ARATH (P42776) G-box-binding factor 3 (AtbZIP55)|
          Length = 382

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -1

Query: 352 PRQNIPE--SSAGAETRHPPSPYAWN 281
           PR  +P   +SA A + HPP PY WN
Sbjct: 42  PRVAMPPYYNSAMAASGHPPPPYMWN 67

>ZAR1_HUMAN (Q86SH2) Zygote arrest 1 (Oocyte-specific maternal effect factor)|
          Length = 424

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 274 CLRSTRTEMAGASSLPRPSFPGCSAAAADRWFSS 375
           CL ++    AGA+SL   SFPGC    A  +F S
Sbjct: 47  CLPASSPCSAGAASL---SFPGCGRLTAAEYFDS 77

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = -1

Query: 358  PPPRQNIPESSAGAETRHP-----PSPYAWNAGM 272
            PPP   IP+  A    +HP     PSP++ NA +
Sbjct: 921  PPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANL 954

>RAB21_GEOCY (Q8WQ53) Ras-related protein Rab-21|
          Length = 229

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 358 PPPRQNIPESSAGAETRHPPS 296
           PP     PES  GA + HPPS
Sbjct: 182 PPSSSTPPESQRGAPSSHPPS 202

>GAG_SFV1 (Q00071) Gag polyprotein (Core polyprotein)|
          Length = 647

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = +1

Query: 301 AGASS---LPRPSFPGCSAAAAD-RWFSSG 378
           A ASS    P PS P  SAAAAD  WF+ G
Sbjct: 196 AAASSPYVAPAPSAPAASAAAADLGWFAGG 225

>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = -1

Query: 358  PPPRQNIPESSAGAETRHP-----PSPYAWNAGM 272
            PPP   IP+  A    +HP     PSP++ NA +
Sbjct: 930  PPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANL 963


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,379,372
Number of Sequences: 219361
Number of extensions: 602722
Number of successful extensions: 2011
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2009
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)