ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome... 40 0.88
2gb|CP000249.1| Frankia sp. CcI3, complete genome 40 0.88
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.88
4emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 38 3.5

>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07,
             complete sequence
          Length = 122120

 Score = 40.1 bits (20), Expect = 0.88
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    cggggagatcggagacgacg 75
             ||||||||||||||||||||
Sbjct: 31097 cggggagatcggagacgacg 31116



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 0.88
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     cttgcgcttgcggcggggag 62
              ||||||||||||||||||||
Sbjct: 933224 cttgcgcttgcggcggggag 933205



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 0.88
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 56       cggggagatcggagacgacg 75
                ||||||||||||||||||||
Sbjct: 26749158 cggggagatcggagacgacg 26749177



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>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 38.2 bits (19), Expect = 3.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 65    cggagacgacgacgctgtc 83
             |||||||||||||||||||
Sbjct: 96168 cggagacgacgacgctgtc 96186


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 333,046
Number of Sequences: 3902068
Number of extensions: 333046
Number of successful extensions: 23106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23036
Number of HSP's gapped (non-prelim): 70
length of query: 83
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 62
effective length of database: 17,151,101,840
effective search space: 1063368314080
effective search space used: 1063368314080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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