ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 42 0.70
2gb|AC158395.2| Mus musculus BAC clone RP23-282I1 from chromosome... 42 0.70
3emb|CT025599.16| Mouse DNA sequence from clone RP24-254G12 on ch... 42 0.70
4emb|BX927111.8| Zebrafish DNA sequence from clone DKEY-54K13 in ... 40 2.8
5gb|AC011816.17|AC011816 Homo sapiens chromosome 3, clone RP11-12... 40 2.8
6gb|L37684.1|REOVAPSI Reovirus sp. (clone 18) viral attachment pr... 40 2.8

>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 148     aagtaccgagcaatcaagtgc 168
               |||||||||||||||||||||
Sbjct: 2029170 aagtaccgagcaatcaagtgc 2029190



to top

>gb|AC158395.2| Mus musculus BAC clone RP23-282I1 from chromosome 14, complete sequence
          Length = 220498

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 193    cttatcaagggaaaaacctac 213
              |||||||||||||||||||||
Sbjct: 207390 cttatcaagggaaaaacctac 207370



to top

>emb|CT025599.16| Mouse DNA sequence from clone RP24-254G12 on chromosome 14, complete
              sequence
          Length = 170436

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 193    cttatcaagggaaaaacctac 213
              |||||||||||||||||||||
Sbjct: 136911 cttatcaagggaaaaacctac 136931



to top

>emb|BX927111.8| Zebrafish DNA sequence from clone DKEY-54K13 in linkage group 3,
             complete sequence
          Length = 49407

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   agtcaaacatgcagatggag 134
             ||||||||||||||||||||
Sbjct: 12298 agtcaaacatgcagatggag 12279



to top

>gb|AC011816.17|AC011816 Homo sapiens chromosome 3, clone RP11-129K12, complete sequence
          Length = 169313

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   atctgaggggcaagtcaaac 122
             ||||||||||||||||||||
Sbjct: 87680 atctgaggggcaagtcaaac 87699



to top

>gb|L37684.1|REOVAPSI Reovirus sp. (clone 18) viral attachment protein sigma 1 and
            non-structural protein sigma 1s genes, complete cds
          Length = 1368

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caacgataaagatatcagaa 29
            ||||||||||||||||||||
Sbjct: 1033 caacgataaagatatcagaa 1014


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,505,245
Number of Sequences: 3902068
Number of extensions: 1505245
Number of successful extensions: 95016
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94989
Number of HSP's gapped (non-prelim): 27
length of query: 217
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 195
effective length of database: 17,147,199,772
effective search space: 3343703955540
effective search space used: 3343703955540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top